* using log directory 'd:/Rcompile/CRANpkg/local/2.13/exactRankTests.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'exactRankTests/DESCRIPTION' ... OK
* this is package 'exactRankTests' version '0.8-22'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'exactRankTests' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386' OK
  Running 'bugfix-tests.R'
  Comparing 'bugfix-tests.Rout' to 'bugfix-tests.Rout.save' ...5,7d4
<  Package 'exactRankTests' is no longer under development.
<  Please consider using package 'coin' instead.
< 
  Running 'dtest.R'
  Comparing 'dtest.Rout' to 'dtest.Rout.save' ...5,7d4
<  Package 'exactRankTests' is no longer under development.
<  Please consider using package 'coin' instead.
< 
32,33c29,30
< psignrank:  0.00213623 pperm:  0.00213623 
< psignrank:  2.563e-06 pperm:  2.563e-06 
---
> psignrank:  0.002136230 pperm:  0.002136230 
> psignrank:  2.563000e-06 pperm:  2.563000e-06 
105c102
< Max difference:  1.110223e-16 
---
> Max difference:  2.775558e-17 
  Running 'exactRankTests-Ex.R'
  Comparing 'exactRankTests-Ex.Rout' to 'exactRankTests-Ex.Rout.save' ...33,35d32
<  Package 'exactRankTests' is no longer under development.
<  Please consider using package 'coin' instead.
< 
93,94c90
< In ansari.test.default(ramsay, jung.parekh) :
<   cannot compute exact p-value with ties
---
> cannot compute exact p-value with ties in: ansari.test.default(ramsay, jung.parekh) 
140c136
< T = 402, p-value = 0.104
---
> T = 402, p-value = 0.1040
156c152
< T = 402, p-value = 0.107
---
> T = 402, p-value = 0.1070
196c192
< [1] 0.0376
---
> [1] 0.0467
200c196
< [1] 0.0705
---
> [1] 0.0791
294c290
< alternative hypothesis: true location shift is less than 0 
---
> alternative hypothesis: true mu is less than 0 
326,327c322
< In findfact(scores - min(scores) + 1, m, tol) :
<   cannot hold tol, tolerance: 0.010292
---
> cannot hold tol, tolerance: 0.010292 in: findfact(scores - min(scores) + 1, m, tol) 
333,334c328
< In findfact(scores - min(scores) + 1, m, tol) :
<   cannot hold tol, tolerance: 0.010292
---
> cannot hold tol, tolerance: 0.010292 in: findfact(scores - min(scores) + 1, m, tol) 
445c439,441
< There were 32 warnings (use warnings() to see them)
---
> Warning messages:
> 1: cannot hold tol, tolerance: 0.010019 in: findfact(scores - min(scores) + 1, m, tol) 
> 2: cannot hold tol, tolerance: 0.010067 in: findfact(scores - min(scores) + 1, m, tol) 
566c562
< [1] 0.0307573
---
> [1] 0.03075730
568,569c564
< In findfact(scores - min(scores) + 1, m, tol) :
<   cannot hold tol, tolerance: 0.047123
---
> cannot hold tol, tolerance: 0.047123 in: findfact(scores - min(scores) + 1, m, tol) 
630c625
< T = 61, p-value = 0.0118
---
> T = 61, p-value = 0.01180
  Running 'exactRankTests-ExOLD.R'
  Comparing 'exactRankTests-ExOLD.Rout' to 'exactRankTests-ExOLD.Rout.save' ...33,35d32
<  Package 'exactRankTests' is no longer under development.
<  Please consider using package 'coin' instead.
< 
96c93
< alternative hypothesis: true location shift is less than 0 
---
> alternative hypothesis: true mu is less than 0 
126,127c123
< In findfact(scores - min(scores) + 1, m, tol) :
<   cannot hold tol, tolerance: 0.010292
---
> cannot hold tol, tolerance: 0.010292 in: findfact(scores - min(scores) + 1, m, tol) 
133,134c129
< In findfact(scores - min(scores) + 1, m, tol) :
<   cannot hold tol, tolerance: 0.010292
---
> cannot hold tol, tolerance: 0.010292 in: findfact(scores - min(scores) + 1, m, tol) 
228c223
< T = 61, p-value = 0.0118
---
> T = 61, p-value = 0.01180
248c243
< T = 402, p-value = 0.104
---
> T = 402, p-value = 0.1040
273c268
< T = 402, p-value = 0.107
---
> T = 402, p-value = 0.1070
358c353
< alternative hypothesis: true location is not equal to 0 
---
> alternative hypothesis: true mu is not equal to 0 
423d417
< +     we$null.value <- NULL
426d419
< +     wt$null.value <- NULL
434d426
< +     we$null.value <- NULL
437d428
< +     wt$null.value <- NULL
457c448
< alternative hypothesis: true location shift is not equal to 0 
---
> alternative hypothesis: true mu is not equal to 0 
481c472
< alternative hypothesis: true location is not equal to 0 
---
> alternative hypothesis: true mu is not equal to 0 
  Running 'reg-tests.R'
  Running 'stest.R'
  Comparing 'stest.Rout' to 'stest.Rout.save' ...5,7d4
<  Package 'exactRankTests' is no longer under development.
<  Please consider using package 'coin' instead.
< 
** running tests for arch 'x64' OK
  Running 'bugfix-tests.R'
  Comparing 'bugfix-tests.Rout' to 'bugfix-tests.Rout.save' ...5,7d4
<  Package 'exactRankTests' is no longer under development.
<  Please consider using package 'coin' instead.
< 
  Running 'dtest.R'
  Comparing 'dtest.Rout' to 'dtest.Rout.save' ...5,7d4
<  Package 'exactRankTests' is no longer under development.
<  Please consider using package 'coin' instead.
< 
32,33c29,30
< psignrank:  0.00213623 pperm:  0.00213623 
< psignrank:  2.563e-06 pperm:  2.563e-06 
---
> psignrank:  0.002136230 pperm:  0.002136230 
> psignrank:  2.563000e-06 pperm:  2.563000e-06 
105c102
< Max difference:  5.689893e-16 
---
> Max difference:  2.775558e-17 
  Running 'exactRankTests-Ex.R'
  Comparing 'exactRankTests-Ex.Rout' to 'exactRankTests-Ex.Rout.save' ...33,35d32
<  Package 'exactRankTests' is no longer under development.
<  Please consider using package 'coin' instead.
< 
93,94c90
< In ansari.test.default(ramsay, jung.parekh) :
<   cannot compute exact p-value with ties
---
> cannot compute exact p-value with ties in: ansari.test.default(ramsay, jung.parekh) 
140c136
< T = 402, p-value = 0.104
---
> T = 402, p-value = 0.1040
156c152
< T = 402, p-value = 0.107
---
> T = 402, p-value = 0.1070
196c192
< [1] 0.0376
---
> [1] 0.0467
200c196
< [1] 0.0705
---
> [1] 0.0791
294c290
< alternative hypothesis: true location shift is less than 0 
---
> alternative hypothesis: true mu is less than 0 
326,327c322
< In findfact(scores - min(scores) + 1, m, tol) :
<   cannot hold tol, tolerance: 0.010292
---
> cannot hold tol, tolerance: 0.010292 in: findfact(scores - min(scores) + 1, m, tol) 
333,334c328
< In findfact(scores - min(scores) + 1, m, tol) :
<   cannot hold tol, tolerance: 0.010292
---
> cannot hold tol, tolerance: 0.010292 in: findfact(scores - min(scores) + 1, m, tol) 
445c439,441
< There were 32 warnings (use warnings() to see them)
---
> Warning messages:
> 1: cannot hold tol, tolerance: 0.010019 in: findfact(scores - min(scores) + 1, m, tol) 
> 2: cannot hold tol, tolerance: 0.010067 in: findfact(scores - min(scores) + 1, m, tol) 
566c562
< [1] 0.0307573
---
> [1] 0.03075730
568,569c564
< In findfact(scores - min(scores) + 1, m, tol) :
<   cannot hold tol, tolerance: 0.047123
---
> cannot hold tol, tolerance: 0.047123 in: findfact(scores - min(scores) + 1, m, tol) 
630c625
< T = 61, p-value = 0.0118
---
> T = 61, p-value = 0.01180
  Running 'exactRankTests-ExOLD.R'
  Comparing 'exactRankTests-ExOLD.Rout' to 'exactRankTests-ExOLD.Rout.save' ...33,35d32
<  Package 'exactRankTests' is no longer under development.
<  Please consider using package 'coin' instead.
< 
96c93
< alternative hypothesis: true location shift is less than 0 
---
> alternative hypothesis: true mu is less than 0 
126,127c123
< In findfact(scores - min(scores) + 1, m, tol) :
<   cannot hold tol, tolerance: 0.010292
---
> cannot hold tol, tolerance: 0.010292 in: findfact(scores - min(scores) + 1, m, tol) 
133,134c129
< In findfact(scores - min(scores) + 1, m, tol) :
<   cannot hold tol, tolerance: 0.010292
---
> cannot hold tol, tolerance: 0.010292 in: findfact(scores - min(scores) + 1, m, tol) 
228c223
< T = 61, p-value = 0.0118
---
> T = 61, p-value = 0.01180
248c243
< T = 402, p-value = 0.104
---
> T = 402, p-value = 0.1040
273c268
< T = 402, p-value = 0.107
---
> T = 402, p-value = 0.1070
358c353
< alternative hypothesis: true location is not equal to 0 
---
> alternative hypothesis: true mu is not equal to 0 
423d417
< +     we$null.value <- NULL
426d419
< +     wt$null.value <- NULL
434d426
< +     we$null.value <- NULL
437d428
< +     wt$null.value <- NULL
457c448
< alternative hypothesis: true location shift is not equal to 0 
---
> alternative hypothesis: true mu is not equal to 0 
481c472
< alternative hypothesis: true location is not equal to 0 
---
> alternative hypothesis: true mu is not equal to 0 
  Running 'reg-tests.R'
  Running 'stest.R'
  Comparing 'stest.Rout' to 'stest.Rout.save' ...5,7d4
<  Package 'exactRankTests' is no longer under development.
<  Please consider using package 'coin' instead.
< 
* checking PDF version of manual ... OK