* using log directory 'd:/Rcompile/CRANpkg/local/2.13/fpc.Rcheck' * using R version 2.13.2 (2011-09-30) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'fpc/DESCRIPTION' ... OK * this is package 'fpc' version '2.0-3' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'fpc' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE dip.pvalue: no visible binding for global variable 'qDiptab' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking differences from 'fpc-Ex.Rout' to 'fpc-Ex.Rout.save' ... 1a2 > 6d6 < 139,141c139,141 < [1,] 1.0000000 9.987508e-01 1.00000e+00 < [2,] 0.9987508 1.000000e+00 1.78102e-11 < [3,] 1.0000000 1.781020e-11 1.00000e+00 --- > [1,] 1.0000000 9.987508e-01 1.000000e+00 > [2,] 0.9987508 1.000000e+00 1.781020e-11 > [3,] 1.0000000 1.781020e-11 1.000000e+00 322c322 < [1] 13.7291 --- > [1] 13.72910 751c751 < 0.27 --- > 0.686 754c754 < 0.2 --- > 0.412 758c758 < 0.58 --- > 0.736 896,898c896,898 < [1,] 0.84359426 1.14608710 -0.02209846 < [2,] -0.33649001 0.27903245 -0.01187219 < [3,] -0.06808816 0.03965075 1.00303099 --- > [1,] 0.84359426 1.14608710 0.02209846 > [2,] -0.33649001 0.27903245 0.01187219 > [3,] -0.06808816 0.03965075 -1.00303099 901,903c901,903 < [1,] -0.07433352 -1.420772600 0.039179197 < [2,] -0.43725296 -0.002745807 -0.005281343 < [3,] -0.03831248 -0.001676168 -1.005389819 --- > [1,] -0.07433352 1.420772600 0.039179197 > [2,] -0.43725296 0.002745807 -0.005281343 > [3,] -0.03831248 0.001676168 -1.005389819 906,908c906,908 < [1,] -1.29527821 0.50007753 -0.33960121 < [2,] 0.65331636 0.05164296 -0.08010673 < [3,] -0.08051801 -0.66005066 -0.46509088 --- > [1,] -1.2952782 0.50007753 -0.33960121 > [2,] 0.6533164 0.05164296 -0.08010673 > [3,] -0.0805180 -0.66005066 -0.46509088 1058,1061c1058,1061 < Sepal.Length 0.3685213 0.9175803 -0.0161054 0.1482532 < Sepal.Width -0.4237402 0.3056933 0.2672553 -0.8096731 < Petal.Length -0.7834017 0.2490473 -0.4429863 0.3577993 < Petal.Width -0.2663044 0.0507288 0.8556158 0.4409424 --- > Sepal.Length 0.3685213 0.9175803 -0.01610540 0.1482532 > Sepal.Width -0.4237402 0.3056933 0.26725530 -0.8096731 > Petal.Length -0.7834017 0.2490473 -0.44298628 0.3577993 > Petal.Width -0.2663044 0.0507288 0.85561579 0.4409424 1098,1101c1098,1101 < Sepal.Length 0.7730041 -0.09914374 0.61019653 -0.14246157 < Sepal.Width 0.4418583 0.79204432 -0.41671437 0.06145083 < Petal.Length -0.4416270 0.59416223 0.66969662 0.05867974 < Petal.Width -0.1104150 0.09903318 -0.07426825 -0.98614663 --- > Sepal.Length 0.7730041 -0.09914374 0.6101968 -0.14246043 > Sepal.Width 0.4418583 0.79204432 -0.4167145 0.06145005 > Petal.Length -0.4416270 0.59416223 0.6696965 0.05868099 > Petal.Width -0.1104150 0.09903318 -0.0742664 -0.98614677 1266c1266 < Constant ca= 10.0701 --- > Constant ca= 10.07010 1274c1274 < Ratio to estimated expectation: 1.5872 --- > Ratio to estimated expectation: 1.587200 1283c1283 < Ratio to estimated expectation: 2.08242 --- > Ratio to estimated expectation: 2.082420 1355c1355 < Nonoptimal or repeated fit found in run 2 --- > k= 2 new best fit found in run 2 1359c1359 < k= 3 BIC= 1292.826 --- > k= 3 BIC= 1300.073 1370,1371c1370,1371 < Comp.1 0.506 48 100 0.48 < Comp.2 0.494 52 100 0.52 --- > Comp.1 0.527 51 100 0.51 > Comp.2 0.473 49 100 0.49 1378,1379c1378,1379 < [38] 2 2 1 2 1 1 2 2 1 1 2 2 2 1 2 1 1 2 2 1 2 2 2 1 2 1 1 2 1 1 2 2 2 1 2 2 1 < [75] 1 1 1 2 2 1 2 1 1 1 1 2 2 1 2 1 1 2 1 2 2 2 2 2 2 2 --- > [38] 2 2 1 2 1 1 2 2 1 1 2 1 2 1 2 1 1 2 2 1 2 2 2 1 2 1 1 2 1 1 2 2 1 1 2 2 1 > [75] 1 1 1 2 2 1 2 1 1 1 1 2 1 1 2 1 1 2 1 2 2 2 2 2 2 2 1384c1384 < [1] -0.06786994 -0.54104769 --- > [1] -0.06364726 -0.51088660 1388,1389c1388,1389 < [1,] 1.13052 0.000000 < [2,] 0.00000 1.091476 --- > [1,] 1.122126 0.000000 > [2,] 0.000000 1.096735 1393c1393 < [1] 0.27877309 0.22952064 0.14780796 0.30344389 0.04045442 --- > [1] 0.27279622 0.22617675 0.15713052 0.29791908 0.04597742 1396c1396 < [1] 0.1441872 0.1676908 0.5133395 0.1747825 --- > [1] 0.1490151 0.1719611 0.5061025 0.1729213 1404c1404 < [1] 0.2365028 0.4120134 --- > [1] 0.2462103 0.4234742 1408,1409c1408,1409 < [1,] 0.6873457 0.0000000 < [2,] 0.0000000 0.8517165 --- > [1,] 0.6738187 0.0000000 > [2,] 0.0000000 0.8547246 1413c1413 < [1] 0.09927107 0.16982896 0.27356225 0.05383639 0.40350133 --- > [1] 0.09744369 0.17073751 0.26910177 0.04818053 0.41453650 1416c1416 < [1] 0.27726281 0.41500389 0.06173992 0.24599338 --- > [1] 0.2781738 0.4219535 0.0484232 0.2514495 1522,1523c1522,1523 < [1,] -0.4301944 0.1259479 -0.1113803 -0.1112671 0.103153 -0.129418 -0.1113858 < [2,] 3.2115590 6.8582670 5.3351123 5.3353299 6.953000 7.402776 5.3351018 --- > [1,] -0.4301944 0.1259479 -0.1113803 -0.1112671 0.1031530 -0.1294180 -0.1113858 > [2,] 3.2115590 6.8582670 5.3351123 5.3353299 6.9529995 7.4027761 5.3351018 1658,1663c1658,1663 < [,1] [,2] [,3] [,4] [,5] [,6] [,7] < [1,] 0.3593477 0.3641063 -0.1113878 0.4429484 0.103153 -0.129418 -0.1113858 < [2,] 12.4801629 12.5943626 5.3350959 13.7169107 6.953000 7.402776 5.3351018 < [,8] [,9] [,10] < [1,] -0.1115167 2.056731 -1.531638 < [2,] 5.3348502 17.205746 17.205554 --- > [,1] [,2] [,3] [,4] [,5] [,6] > [1,] 0.3593477 0.3641063 -0.1113878 0.4429484 0.1031530 -0.1294180 > [2,] 12.4801629 12.5943626 5.3350959 13.7169107 6.9529995 7.4027761 > [,7] [,8] [,9] [,10] > [1,] -0.1113858 -0.1115167 2.056731 -1.531638 > [2,] 5.3351018 5.3348502 17.205746 17.205554 1669,1670c1669,1670 < [1,] 3.520894 1.18919 < [2,] 1.189190 67.08240 --- > [1,] 3.520894 1.189190 > [2,] 1.189190 67.082397 2269,2272c2269,2272 < [1,] 0.069320616 0.0518644883 0.0046873868 0.0095366850 < [2,] 0.051864488 0.0431650668 0.0004939104 0.0007935271 < [3,] 0.004687387 0.0004939104 0.0032572771 0.0062259484 < [4,] 0.009536685 0.0007935271 0.0062259484 0.0124828618 --- > [1,] 0.069320616 0.0518644883 0.0046873868 0.009536685 > [2,] 0.051864488 0.0431650668 0.0004939104 0.000793527 > [3,] 0.004687387 0.0004939104 0.0032572771 0.006225948 > [4,] 0.009536685 0.0007935271 0.0062259484 0.012482862 2301c2301 < [1,] 0.066419771 0.036305431 -0.038563657 -0.009616087 --- > [1,] 0.066419771 0.036305431 -0.038563657 -0.009616086 2304c2304 < [4,] -0.009616087 -0.004044032 0.006369898 0.001595522 --- > [4,] -0.009616086 -0.004044032 0.006369898 0.001595522 2309,2328c2309,2328 < 122 1.000000e+00 0.000000e+00 0.0000000 0.00000e+00 0 0.000000e+00 < 42 1.000000e+00 1.000000e+00 0.0000000 0.00000e+00 0 0.000000e+00 < 45 7.431477e-78 7.431477e-78 1.0000000 0.00000e+00 0 0.000000e+00 < 86 1.000000e+00 0.000000e+00 0.0000000 7.61652e-267 0 0.000000e+00 < 70 1.074570e-19 0.000000e+00 0.0000000 1.00000e+00 0 0.000000e+00 < 137 4.300906e-134 0.000000e+00 0.0000000 0.00000e+00 1 0.000000e+00 < 37 9.430013e-103 9.430013e-103 1.0000000 0.00000e+00 0 0.000000e+00 < 46 1.000000e+00 1.000000e+00 0.0000000 0.00000e+00 0 0.000000e+00 < 134 0.000000e+00 0.000000e+00 0.0000000 0.00000e+00 0 0.000000e+00 < 88 0.000000e+00 0.000000e+00 0.0000000 0.00000e+00 0 1.000000e+00 < 72 2.877478e-90 0.000000e+00 0.0000000 1.00000e+00 0 0.000000e+00 < 123 0.000000e+00 0.000000e+00 0.0000000 0.00000e+00 0 0.000000e+00 < 1 8.836887e-28 8.836887e-28 1.0000000 0.00000e+00 0 0.000000e+00 < 147 1.424320e-288 0.000000e+00 0.0000000 0.00000e+00 0 1.000000e+00 < 51 0.000000e+00 0.000000e+00 0.0000000 0.00000e+00 0 0.000000e+00 < 120 0.000000e+00 0.000000e+00 0.0000000 0.00000e+00 0 9.998512e-01 < 9 1.000000e+00 1.000000e+00 0.0000000 0.00000e+00 0 0.000000e+00 < 18 3.526927e-03 3.526927e-03 0.9964731 0.00000e+00 0 0.000000e+00 < 28 8.360527e-61 8.360527e-61 1.0000000 0.00000e+00 0 0.000000e+00 < 54 2.602855e-34 0.000000e+00 0.0000000 1.00000e+00 0 1.825211e-292 --- > 122 1.000000e+00 0.000000e+00 0.000000 0.00000e+00 0 0.000000e+00 > 42 1.000000e+00 1.000000e+00 0.000000 0.00000e+00 0 0.000000e+00 > 45 7.431477e-78 7.431477e-78 1.000000 0.00000e+00 0 0.000000e+00 > 86 1.000000e+00 0.000000e+00 0.000000 7.61652e-267 0 0.000000e+00 > 70 1.074570e-19 0.000000e+00 0.000000 1.00000e+00 0 0.000000e+00 > 137 4.300906e-134 0.000000e+00 0.000000 0.00000e+00 1 0.000000e+00 > 37 9.430013e-103 9.430013e-103 1.000000 0.00000e+00 0 0.000000e+00 > 46 1.000000e+00 1.000000e+00 0.000000 0.00000e+00 0 0.000000e+00 > 134 0.000000e+00 0.000000e+00 0.000000 0.00000e+00 0 0.000000e+00 > 88 0.000000e+00 0.000000e+00 0.000000 0.00000e+00 0 1.000000e+00 > 72 2.877478e-90 0.000000e+00 0.000000 1.00000e+00 0 0.000000e+00 > 123 0.000000e+00 0.000000e+00 0.000000 0.00000e+00 0 0.000000e+00 > 1 8.836887e-28 8.836887e-28 1.000000 0.00000e+00 0 0.000000e+00 > 147 1.424320e-288 0.000000e+00 0.000000 0.00000e+00 0 1.000000e+00 > 51 0.000000e+00 0.000000e+00 0.000000 0.00000e+00 0 0.000000e+00 > 120 0.000000e+00 0.000000e+00 0.000000 0.00000e+00 0 9.998512e-01 > 9 1.000000e+00 1.000000e+00 0.000000 0.00000e+00 0 0.000000e+00 > 18 3.526927e-03 3.526927e-03 0.996473 0.00000e+00 0 0.000000e+00 > 28 8.360527e-61 8.360527e-61 1.000000 0.00000e+00 0 0.000000e+00 > 54 2.602855e-34 0.000000e+00 0.000000 1.00000e+00 0 1.825211e-292 2339c2339 < 88 0.000000e+00 4.082716e-80 --- > 88 0.000000e+00 4.085183e-80 OK * checking for unstated dependencies in tests ... OK * checking tests ... OK Running 'fpctests.R' Comparing 'fpctests.Rout' to 'fpctests.Rout.save' ...5a6 > 10d10 < 23,25c23,25 < [1,] -1.39122951 -0.30933547 0.10928950 < [2,] 0.62109134 -0.22334223 0.01643619 < [3,] -0.03130796 0.07485511 -0.80738843 --- > [1,] -1.39122951 -0.3093355 0.10928950 > [2,] 0.62109134 -0.2233422 0.01643619 > [3,] -0.03130796 0.0748551 -0.80738843 28,30c28,30 < [1,] 0.2153917 -0.33885087 -0.518856215 < [2,] -0.3702908 0.01439633 -0.008930009 < [3,] 0.1108281 0.79140767 -0.235742343 --- > [1,] 0.2153917 -0.33885087 -0.51885622 > [2,] -0.3702908 0.01439633 -0.00893001 > [3,] 0.1108281 0.79140767 -0.23574234 37c37 < 4 clusters 833.1691 --- > 4 clusters 833.169 92,94c92,94 < 12 13.9716414 13.677807 14.503586 13.94655 14.0084574 13.6015727 13.784232 < 34 0.3227397 0.459568 0.841392 1.21862 0.4964457 0.1656088 2.670075 < 50 14.6877989 15.036740 14.241074 15.09286 14.7181912 14.9490175 14.477326 --- > 12 13.9716414 13.677807 14.503586 13.946552 14.0084574 13.6015727 13.784232 > 34 0.3227397 0.459568 0.841392 1.218620 0.4964457 0.1656088 2.670075 > 50 14.6877989 15.036740 14.241074 15.092859 14.7181912 14.9490175 14.477326 803,804c803,804 < [1] 4 4 4 3 4 3 3 1 5 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 2 2 2 2 < [39] 2 2 2 1 1 1 1 1 5 5 5 5 --- > [1] 1 1 1 4 1 4 4 3 5 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 2 2 2 2 2 2 > [39] 2 2 2 3 3 3 3 3 5 5 5 5 807,810c807,810 < 4 0.6842995 1.2614578 < 29 0.8974744 -1.0022315 < 24 -0.7193505 0.1440717 < 1 -0.4994704 -1.4250867 --- > 2 -0.4994704 -1.4250867 > 41 0.8974744 -1.0022315 > 11 0.6842995 1.2614578 > 15 -0.7193505 0.1440717 821c821 < [1] FALSE FALSE FALSE FALSE FALSE FALSE FALSE TRUE FALSE FALSE FALSE FALSE --- > [1] TRUE TRUE TRUE FALSE TRUE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 824c824 < [37] FALSE FALSE FALSE FALSE FALSE TRUE TRUE TRUE TRUE TRUE FALSE FALSE --- > [37] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE 835,838c835,838 < [1] FALSE FALSE FALSE TRUE FALSE TRUE TRUE FALSE FALSE TRUE TRUE TRUE < [13] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE < [25] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE FALSE FALSE FALSE FALSE < [37] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE --- > [1] FALSE FALSE FALSE FALSE FALSE FALSE FALSE TRUE FALSE FALSE FALSE FALSE > [13] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE > [25] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE > [37] FALSE FALSE FALSE FALSE FALSE TRUE TRUE TRUE TRUE TRUE FALSE FALSE 842,844c842,844 < [1] TRUE TRUE TRUE FALSE TRUE FALSE FALSE FALSE FALSE FALSE FALSE FALSE < [13] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE < [25] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE --- > [1] FALSE FALSE FALSE TRUE FALSE TRUE TRUE FALSE FALSE TRUE TRUE TRUE > [13] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE > [25] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE FALSE FALSE FALSE FALSE 857,858c857,858 < [1] 4 4 4 3 4 3 3 1 5 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 2 2 2 2 < [39] 2 2 2 1 1 1 1 1 5 5 5 5 --- > [1] 1 1 1 4 1 4 4 3 5 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 2 2 2 2 2 2 > [39] 2 2 2 3 3 3 3 3 5 5 5 5 899c899 < [1] 15.23 --- > [1] 15.23000 1021,1022c1021,1022 < [1,] 8 0.13861386 < [2,] 7 0.65346535 --- > [1,] 8 0.17821782 > [2,] 7 0.68316832 * checking PDF version of manual ... OK