* using log directory 'd:/Rcompile/CRANpkg/local/2.13/gRim.Rcheck' * using R version 2.13.2 (2011-09-30) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'gRim/DESCRIPTION' ... OK * this is package 'gRim' version '0.1.7' * package encoding: latin1 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'gRim' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable compilation flags in Makevars ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking sizes of PDF files under inst/doc ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... OK * checking re-building of vignettes ... NOTE Error in re-building vignettes: ... change.AIC -4.6363 Edge deleted: protein mental change.AIC -1.6324 Edge deleted: family systol change.AIC -3.4233 Edge deleted: protein family change.AIC -0.9819 Edge deleted: family phys change.AIC -1.3419 Edge deleted: family smoke . FORWARD: type=decomposable search=all, criterion=aic(2.00), alpha=0.00 . Initial model: is graphical=TRUE is decomposable=TRUE change.AIC -683.9717 Edge added: phys mental change.AIC -25.4810 Edge added: phys smoke change.AIC -15.9293 Edge added: mental protein change.AIC -10.8092 Edge added: protein systol change.AIC -2.7316 Edge added: mental family change.AIC -1.9876 Edge added: smoke mental change.AIC -16.4004 Edge added: smoke protein change.AIC -12.5417 Edge added: smoke systol Warning: running command '"d:\compiler\texmf\miktex\bin\texi2dvi.exe" --quiet --pdf "gRim.tex" -I "d:/Rcompile/recent/R-2.13.2/share/texmf/tex/latex" -I "d:/Rcompile/recent/R-2.13.2/share/texmf/bibtex/bst"' had status 1 Error: running 'texi2dvi' on 'gRim.tex' failed LaTeX errors: ! LaTeX Error: File `GMIR.sty' not found. Type X to quit or to proceed, or enter new name. (Default extension: sty) Execution halted * checking PDF version of manual ... OK