* using log directory 'd:/Rcompile/CRANpkg/local/2.13/gplots.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'gplots/DESCRIPTION' ... OK
* this is package 'gplots' version '2.10.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'gplots' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
plotCI: multiple local function definitions for 'myarrows' with
  different formal arguments
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: MASS
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under inst/doc ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ... OK
  Running 'heatmap2Test.R'
  Comparing 'heatmap2Test.Rout' to 'heatmap2Test.Rout.save' ...6,11c6
< gdata: Unable to load perl libaries needed by read.xls()
< gdata: to support 'XLSX' (Excel 2007+) files.
< 
< gdata: Run the function 'installXLSXsupport()'
< gdata: to automatically download and install the perl
< gdata: libaries needed to support Excel XLS and XLSX formats.
---
> gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
15,18d9
< The following object(s) are masked from 'package:stats':
< 
<     nobs
< 
137c128
<   ..  |     |     |--leaf "Lincoln Continental" ( value.Lincoln Continental = 66.1 )
---
>   ..  |     |     |--leaf "Lincoln Continental" ( value.Lincoln Continental = 66 )
151c142
<   ..     |  |  |--leaf "Valiant" ( value.Valiant = 35 )
---
>   ..     |  |  |--leaf "Valiant" ( value.Valiant = 35.0 )
154c145
<   ..     |     |--[dendrogram w/ 2 branches and 2 members at h = 14, midpoint = 0.5, value = 93.2]
---
>   ..     |     |--[dendrogram w/ 2 branches and 2 members at h = 14.0, midpoint = 0.5, value = 93.2]
159c150
<   ..     |        `--[dendrogram w/ 2 branches and 2 members at h = 0.983, midpoint = 0.5, value = 92.9]
---
>   ..     |        `--[dendrogram w/ 2 branches and 2 members at h = 0.983, midpoint = 0.5, value = 93]
163c154
<   ..        |--[dendrogram w/ 2 branches and 4 members at h = 14.8, midpoint = 0.875, value = 74.9]
---
>   ..        |--[dendrogram w/ 2 branches and 4 members at h = 14.8, midpoint = 0.875, value = 75]
170c161
<   ..        `--[dendrogram w/ 2 branches and 12 members at h = 113, midpoint = 2.3, value = 334]
---
>   ..        `--[dendrogram w/ 2 branches and 12 members at h = 113, midpoint = 2.30, value = 334]
  Running 'heatmap_to_heatmap.2_test.R'
  Running 'plotmeans_nobars.R'
* checking PDF version of manual ... OK