* using log directory 'd:/Rcompile/CRANpkg/local/2.13/intamap.Rcheck' * using R version 2.13.2 (2011-09-30) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'intamap/DESCRIPTION' ... OK * this is package 'intamap' version '1.3-11' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'intamap' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE predictTime: no visible binding for global variable 'timeModels' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking for unstated dependencies in tests ... OK * checking tests ... OK Running 'anisotropyTest.R' Comparing 'anisotropyTest.Rout' to 'anisotropyTest.Rout.save' ...4,10d3 < < Attaching package: 'zoo' < < The following object(s) are masked from 'package:base': < < as.Date, as.Date.numeric < 12,15c5,8 < Loaded GDAL runtime: GDAL 1.8.1, released 2011/07/09 < Path to GDAL shared files: d:/RCompile/CRANpkg/lib/2.13/rgdal/gdal < Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470] < Path to PROJ.4 shared files: d:/RCompile/CRANpkg/lib/2.13/rgdal/proj --- > Loaded GDAL runtime: GDAL 1.6.1, released 2009/05/11 > Path to GDAL shared files: c:/R/R-29~1.1/library/rgdal/gdal > Loaded PROJ.4 runtime: Rel. 4.6.1, 21 August 2008 > Path to PROJ.4 shared files: c:/R/R-29~1.1/library/rgdal/proj 19c12,13 < The following object(s) are masked from 'package:evd': --- > > The following object(s) are masked from package:evd : 106,107c100,101 < 1 Nug 0.0148462 0.000000 < 2 Sph 0.6299043 0.634356 --- > 1 Nug 0.01484620 0.000000 > 2 Sph 0.62990427 0.634356 187c181 < [1,] 103.368 161.6921 1.593826 --- > [1,] 103.3680 161.6921 1.593826 Running 'block.R' Comparing 'block.Rout' to 'block.Rout.save' ...4,10d3 < < Attaching package: 'zoo' < < The following object(s) are masked from 'package:base': < < as.Date, as.Date.numeric < 12,15c5,8 < Loaded GDAL runtime: GDAL 1.8.1, released 2011/07/09 < Path to GDAL shared files: d:/RCompile/CRANpkg/lib/2.13/rgdal/gdal < Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470] < Path to PROJ.4 shared files: d:/RCompile/CRANpkg/lib/2.13/rgdal/proj --- > Loaded GDAL runtime: GDAL 1.6.1, released 2009/05/11 > Path to GDAL shared files: c:/R/R-29~1.1/library/rgdal/gdal > Loaded PROJ.4 runtime: Rel. 4.6.1, 21 August 2008 > Path to PROJ.4 shared files: c:/R/R-29~1.1/library/rgdal/proj 19c12,13 < The following object(s) are masked from 'package:evd': --- > > The following object(s) are masked from package:evd : Running 'idw.R' Comparing 'idw.Rout' to 'idw.Rout.save' ...4,10d3 < < Attaching package: 'zoo' < < The following object(s) are masked from 'package:base': < < as.Date, as.Date.numeric < 12,15c5,8 < Loaded GDAL runtime: GDAL 1.8.1, released 2011/07/09 < Path to GDAL shared files: d:/RCompile/CRANpkg/lib/2.13/rgdal/gdal < Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470] < Path to PROJ.4 shared files: d:/RCompile/CRANpkg/lib/2.13/rgdal/proj --- > Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23 > Path to GDAL shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/gdal > Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009 > Path to PROJ.4 shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/proj Running 'interpolate.R' Comparing 'interpolate.Rout' to 'interpolate.Rout.save' ...5,11d4 < < Attaching package: 'zoo' < < The following object(s) are masked from 'package:base': < < as.Date, as.Date.numeric < 13,16c6,9 < Loaded GDAL runtime: GDAL 1.8.1, released 2011/07/09 < Path to GDAL shared files: d:/RCompile/CRANpkg/lib/2.13/rgdal/gdal < Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470] < Path to PROJ.4 shared files: d:/RCompile/CRANpkg/lib/2.13/rgdal/proj --- > Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23 > Path to GDAL shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/gdal > Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009 > Path to PROJ.4 shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/proj 30c23 < R 2012-02-25 16:02:32 interpolating 155 observations, 3103 prediction locations --- > R 2011-02-28 17:27:00 interpolating 155 observations, 3103 prediction locations 39c32 < 2: closing unused connection 3 (d:\temp\RtmpUw47Al\file7488111a) --- > 2: closing unused connection 3 (C:\Users\skoiejo\AppData\Local\Temp\RtmphOg4zb\file2714278f) 71c64 < R 2012-02-25 16:02:47 interpolating 155 observations, 3103 prediction locations --- > R 2011-02-28 17:27:16 interpolating 155 observations, 3103 prediction locations 411c404 < R 2012-02-25 16:02:52 interpolating 155 observations, 3103 prediction locations --- > R 2011-02-28 17:27:19 interpolating 155 observations, 3103 prediction locations 423c416 < closing unused connection 3 (d:\temp\RtmpUw47Al\file22205320) --- > closing unused connection 3 (C:\Users\skoiejo\AppData\Local\Temp\RtmphOg4zb\file3dce117c) 436c429 < R 2012-02-25 16:02:54 interpolating 30 observations, 24 prediction locations --- > R 2011-02-28 17:27:21 interpolating 30 observations, 24 prediction locations 443c436 < R 2012-02-25 16:02:57 interpolating 30 observations, 24 prediction locations --- > R 2011-02-28 17:27:23 interpolating 30 observations, 24 prediction locations Running 'interpolateBlock.R' Comparing 'interpolateBlock.Rout' to 'interpolateBlock.Rout.save' ...4,10d3 < < Attaching package: 'zoo' < < The following object(s) are masked from 'package:base': < < as.Date, as.Date.numeric < 12,15c5,8 < Loaded GDAL runtime: GDAL 1.8.1, released 2011/07/09 < Path to GDAL shared files: d:/RCompile/CRANpkg/lib/2.13/rgdal/gdal < Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470] < Path to PROJ.4 shared files: d:/RCompile/CRANpkg/lib/2.13/rgdal/proj --- > Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23 > Path to GDAL shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/gdal > Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009 > Path to PROJ.4 shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/proj 36c29 < R 2012-02-25 16:03:01 interpolating 155 observations, 48 prediction locations --- > R 2011-02-28 17:22:30 interpolating 155 observations, 48 prediction locations 79c72 < R 2012-02-25 16:03:02 interpolating 155 observations, 48 prediction locations --- > R 2011-02-28 17:22:30 interpolating 155 observations, 48 prediction locations 101c94 < [1] 0.0162806 --- > [1] 0.01628060 Running 'javaR.R' Comparing 'javaR.Rout' to 'javaR.Rout.save' ...4,10d3 < < Attaching package: 'zoo' < < The following object(s) are masked from 'package:base': < < as.Date, as.Date.numeric < 12,15c5,8 < Loaded GDAL runtime: GDAL 1.8.1, released 2011/07/09 < Path to GDAL shared files: d:/RCompile/CRANpkg/lib/2.13/rgdal/gdal < Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470] < Path to PROJ.4 shared files: d:/RCompile/CRANpkg/lib/2.13/rgdal/proj --- > Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23 > Path to GDAL shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/gdal > Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009 > Path to PROJ.4 shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/proj 63,68c56,61 < Min. :4021158 Min. :3102915 Min. :4.805 Min. :0.09789 < 1st Qu.:4021733 1st Qu.:3103766 1st Qu.:5.485 1st Qu.:0.14345 < Median :4022423 Median :3104617 Median :5.675 Median :0.33215 < Mean :4022423 Mean :3104617 Mean :5.965 Mean :0.39523 < 3rd Qu.:4023113 3rd Qu.:3105468 3rd Qu.:6.456 3rd Qu.:0.64199 < Max. :4023688 Max. :3106318 Max. :7.497 Max. :0.78320 --- > Min. :4021158 Min. :3102915 Min. :4.805 Min. :0.0979 > 1st Qu.:4021733 1st Qu.:3103766 1st Qu.:5.485 1st Qu.:0.1435 > Median :4022423 Median :3104617 Median :5.675 Median :0.3322 > Mean :4022423 Mean :3104617 Mean :5.965 Mean :0.3952 > 3rd Qu.:4023113 3rd Qu.:3105468 3rd Qu.:6.456 3rd Qu.:0.6420 > Max. :4023688 Max. :3106318 Max. :7.497 Max. :0.7832 Running 'linearVariogram.R' Comparing 'linearVariogram.Rout' to 'linearVariogram.Rout.save' ...4,10d3 < < Attaching package: 'zoo' < < The following object(s) are masked from 'package:base': < < as.Date, as.Date.numeric < 12,15c5,8 < Loaded GDAL runtime: GDAL 1.8.1, released 2011/07/09 < Path to GDAL shared files: d:/RCompile/CRANpkg/lib/2.13/rgdal/gdal < Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470] < Path to PROJ.4 shared files: d:/RCompile/CRANpkg/lib/2.13/rgdal/proj --- > Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23 > Path to GDAL shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/gdal > Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009 > Path to PROJ.4 shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/proj Running 'minimal.R' Comparing 'minimal.Rout' to 'minimal.Rout.save' ...4,10d3 < < Attaching package: 'zoo' < < The following object(s) are masked from 'package:base': < < as.Date, as.Date.numeric < 12,15c5,8 < Loaded GDAL runtime: GDAL 1.8.1, released 2011/07/09 < Path to GDAL shared files: d:/RCompile/CRANpkg/lib/2.13/rgdal/gdal < Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470] < Path to PROJ.4 shared files: d:/RCompile/CRANpkg/lib/2.13/rgdal/proj --- > Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23 > Path to GDAL shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/gdal > Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009 > Path to PROJ.4 shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/proj 64,65c57,58 < x 178460 181540 < y 329620 333740 --- > x 178440 181560 > y 329600 333760 Running 'transGaussian.R' Comparing 'transGaussian.Rout' to 'transGaussian.Rout.save' ...5,11d4 < < Attaching package: 'zoo' < < The following object(s) are masked from 'package:base': < < as.Date, as.Date.numeric < 13,16c6,9 < Loaded GDAL runtime: GDAL 1.8.1, released 2011/07/09 < Path to GDAL shared files: d:/RCompile/CRANpkg/lib/2.13/rgdal/gdal < Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470] < Path to PROJ.4 shared files: d:/RCompile/CRANpkg/lib/2.13/rgdal/proj --- > Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23 > Path to GDAL shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/gdal > Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009 > Path to PROJ.4 shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/proj 31c24 < R 2012-02-25 16:03:16 interpolating 155 observations, 3103 prediction locations --- > R 2011-02-28 17:22:38 interpolating 155 observations, 3103 prediction locations 49c42 < closing unused connection 3 (d:\temp\RtmpSjgUEq\file7d35de8) --- > closing unused connection 3 (C:\Users\skoiejo\AppData\Local\Temp\Rtmph7f4zb\file1f9c1f20) Running 'unbiased.R' Comparing 'unbiased.Rout' to 'unbiased.Rout.save' ...5,11d4 < < Attaching package: 'zoo' < < The following object(s) are masked from 'package:base': < < as.Date, as.Date.numeric < 13,16c6,9 < Loaded GDAL runtime: GDAL 1.8.1, released 2011/07/09 < Path to GDAL shared files: d:/RCompile/CRANpkg/lib/2.13/rgdal/gdal < Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470] < Path to PROJ.4 shared files: d:/RCompile/CRANpkg/lib/2.13/rgdal/proj --- > Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23 > Path to GDAL shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/gdal > Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009 > Path to PROJ.4 shared files: E:\skojejo\Documents/R/win-library/2.12/rgdal/proj * checking PDF version of manual ... OK