* using log directory 'd:/Rcompile/CRANpkg/local/2.13/ipred.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'ipred/DESCRIPTION' ... OK
* this is package 'ipred' version '0.8-13'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ipred' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking sizes of PDF files under inst/doc ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386' OK
  Running 'ipred-bugs.R'
  Comparing 'ipred-bugs.Rout' to 'ipred-bugs.Rout.save' ... OK
  Running 'ipred-segfault.R'
  Comparing 'ipred-segfault.Rout' to 'ipred-segfault.Rout.save' ... OK
  Running 'ipred-smalltest.R'
  Comparing 'ipred-smalltest.Rout' to 'ipred-smalltest.Rout.save' ... OK
  Running 'ipred-tests.R'
  Comparing 'ipred-tests.Rout' to 'ipred-tests.Rout.save' ... OK
** running tests for arch 'x64' OK
  Running 'ipred-bugs.R'
  Comparing 'ipred-bugs.Rout' to 'ipred-bugs.Rout.save' ...167c167
< [1] 0.949367
---
> [1] 0.9612632
169c169
< [1] 0.9148273
---
> [1] 0.9073771
  Running 'ipred-segfault.R'
  Comparing 'ipred-segfault.Rout' to 'ipred-segfault.Rout.save' ...31c31
< Out-of-bag estimate of misclassification error:  0.195 
---
> Out-of-bag estimate of misclassification error:  0.185 
34c34
<  [1] 1 1 1 2 2 2 1 1 1 1
---
>  [1] 1 1 1 1 2 2 1 1 1 1
52c52
<  [1] 1 1 1 1 1 2 1 2 1 2
---
>  [1] 1 1 1 1 2 2 1 2 1 2
58c58
<  [1] 1 1 1 1 2 2 1 2 1 2
---
>  [1] 1 1 1 1 1 2 1 2 1 2
69c69
<  [8,] 0.1 0.9
---
>  [8,] 0.0 1.0
81c81
<  [8,] 0.1 0.9
---
>  [8,] 0.0 1.0
86,95c86,95
<  [1,] 1.000000000 0.000000000
<  [2,] 0.996441281 0.003558719
<  [3,] 1.000000000 0.000000000
<  [4,] 1.000000000 0.000000000
<  [5,] 0.484359233 0.515640767
<  [6,] 0.000000000 1.000000000
<  [7,] 1.000000000 0.000000000
<  [8,] 0.001138952 0.998861048
<  [9,] 1.000000000 0.000000000
< [10,] 0.000000000 1.000000000
---
>  [1,] 1.0000000 0.000000000
>  [2,] 0.9976303 0.002369668
>  [3,] 1.0000000 0.000000000
>  [4,] 1.0000000 0.000000000
>  [5,] 0.5311111 0.468888889
>  [6,] 0.0000000 1.000000000
>  [7,] 1.0000000 0.000000000
>  [8,] 0.0000000 1.000000000
>  [9,] 1.0000000 0.000000000
> [10,] 0.0000000 1.000000000
108c108
< Misclassification error:  0.035 
---
> Misclassification error:  0.04 
149c149
< Misclassification error:  0.11 
---
> Misclassification error:  0.095 
160c160
< Misclassification error:  0.07 
---
> Misclassification error:  0.085 
172,173c172,173
< Misclassification error:  0.0388 
< Standard deviation: 0.0029 
---
> Misclassification error:  0.0391 
> Standard deviation: 0.0027 
185c185
< Misclassification error:  0.0332 
---
> Misclassification error:  0.0333 
203c203
< Out-of-bag estimate of root mean squared error:  3.5077 
---
> Out-of-bag estimate of root mean squared error:  3.5394 
206,207c206,207
<  [1] 11.89640 13.53735 10.67191 11.90026 13.67112 10.47250 15.93565 15.76868
<  [9] 17.64140 17.54231
---
>  [1] 17.52261 10.07663 12.96417 13.86483 14.07599 16.60311       NA 21.18277
>  [9] 16.92367       NA
210,211c210,211
<  [1] 21.13210 17.05773 14.36727 13.23833 11.40763 12.36486 19.00303 14.98115
<  [9] 19.09551 17.23454
---
>  [1] 17.988182 11.996216 19.349240 16.608268 11.051775 15.140120 10.996003
>  [8]  9.471202 14.869813 13.846185
213,214c213,214
<  [1] 21.13210 17.05773 14.36727 13.23833 11.40763 12.36486 19.00303 14.98115
<  [9] 19.09551 17.23454
---
>  [1] 17.988182 11.996216 19.349240 16.608268 11.051775 15.140120 10.996003
>  [8]  9.471202 14.869813 13.846185
216,217c216,217
<  [1] 21.27480 16.62497 14.46233 13.44548 11.68707 12.79660 19.37107 15.25045
<  [9] 19.05139 18.08567
---
>  [1] 18.163683 12.034196 19.291462 16.861436 11.071367 15.258870 11.600688
>  [8]  9.460784 14.971003 13.922154
225c225
< Root mean squared error:  2.5998 
---
> Root mean squared error:  2.6627 
236c236
< Root mean squared error:  2.6421 
---
> Root mean squared error:  2.5703 
264c264
< Root mean squared error:  2.6975 
---
> Root mean squared error:  2.6721 
286c286
< 154.0000 154.0000 154.0000 154.0000   0.0858   0.0769   0.1111 
---
> 183.0000 183.0000 183.0000 183.0000   0.0421   0.0342   0.0475 
292c292
< 146.0000 146.0000 146.0000 146.0000   0.0673   0.0544   0.1145 
---
> 130.000 130.000 130.000 130.000   0.501   0.489   0.532 
298c298
< 122.000 122.000 122.000 122.000   0.306   0.274   0.377 
---
> 160.0000 160.0000 160.0000 160.0000   0.0428   0.0359   0.0568 
304c304
< 119.0000 119.0000 119.0000 119.0000   0.0986   0.0807   0.1145 
---
> 152.0000 152.0000 152.0000 152.0000   0.0475   0.0378   0.0514 
310c310
< 150.0000 150.0000 150.0000 150.0000   0.0242   0.0169   0.0411 
---
> 130.000 130.000 130.000 130.000   0.489   0.399   0.532 
316c316
< 136.0000 136.0000 136.0000 136.0000   0.0412   0.0342   0.0522 
---
> 149.0000 149.0000 149.0000 149.0000   0.0302   0.0172   0.0342 
322c322
< 122.000 122.000 122.000 122.000   0.306   0.274   0.377 
---
> 141.000 141.000 141.000 141.000   0.489   0.398   0.532 
328c328
< 149.0000 149.0000 149.0000 149.0000   0.0552   0.0544   0.0691 
---
> 160.0000 160.0000 160.0000 160.0000   0.0315   0.0187   0.0359 
334c334
< 123.000 123.000 123.000 123.000   0.366   0.317   0.399 
---
> 169.000 169.000 169.000 169.000   0.175   0.137   0.209 
340c340
< 163.0000 163.0000 163.0000 163.0000   0.0522   0.0444   0.0552 
---
> 132.0000 132.0000 132.0000 132.0000   0.1050   0.0718   0.1191 
358c358
< Brier's score:  0.076 
---
> Brier's score:  0.0955 
371c371
< Brier's score:  0.0898 
---
> Brier's score:  0.069 
405,406c405,406
<  [1] 19.884659  7.979953 15.136274 17.090984 10.593808 15.343204 17.641397
<  [8] 12.360645 14.277689 10.893690
---
>  [1]  6.440993 14.435812 10.847327 14.837533 13.010493  6.156936 20.132612
>  [8]  6.879375 14.076470 16.636056
  Running 'ipred-smalltest.R'
  Comparing 'ipred-smalltest.Rout' to 'ipred-smalltest.Rout.save' ... OK
  Running 'ipred-tests.R'
  Comparing 'ipred-tests.Rout' to 'ipred-tests.Rout.save' ...741c741
< Out-of-bag estimate of misclassification error:  0.0366 
---
> Out-of-bag estimate of misclassification error:  0.0381 
749c749
< Out-of-bag estimate of root mean squared error:  3.9905 
---
> Out-of-bag estimate of root mean squared error:  3.9809 
756c756
< Out-of-bag estimate of root mean squared error:  2.8515 
---
> Out-of-bag estimate of root mean squared error:  2.8832 
765c765
< Out-of-bag estimate of Brier's score:  0.1969 
---
> Out-of-bag estimate of Brier's score:  0.1927 
773c773
< Out-of-bag estimate of misclassification error:  0.3551 
---
> Out-of-bag estimate of misclassification error:  0.3271 
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... OK
* checking re-building of vignettes ... OK
* checking PDF version of manual ... OK