* using log directory 'd:/Rcompile/CRANpkg/local/2.13/lme4.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'lme4/DESCRIPTION' ... OK
* this is package 'lme4' version '0.999375-42'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'lme4' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking sizes of PDF files under inst/doc ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386' OK
  Running 'Gamma.R'
  Running 'drop.R'
  Running 'extras.R'
  Running 'lmer-1.R'
  Comparing 'lmer-1.Rout' to 'lmer-1.Rout.save' ...138c138
< 6   -1.7594785
---
> 6   -1.7594786
432c432
<  group    (Intercept) 140.641500 11.85924        
---
>  group    (Intercept) 140.641531 11.85924        
439c439
< (Intercept) 15.23544    8.40776   1.812
---
> (Intercept) 15.23552    8.40776   1.812
458c458
< [1,]  7.18678626
---
> [1,]  7.18678711
466c466
< [1] 87.58735
---
> [1] 87.58733
472c472
<     1     0   300   900     4 
---
>     1     0   300   900     5 
476,477c476,477
< (Intercept) 15.2354444
< x            0.1855864
---
> (Intercept) 15.2355231
> x            0.1855856
484,487c484,487
< [1,] -8.35043095
< [2,]  8.35043095
< [3,]  0.08457405
< [4,] -0.08457405
---
> [1,] -8.35048135
> [2,]  8.35048135
> [3,]  0.08457456
> [4,] -0.08457456
  Running 'lmer-conv.R'
  Running 'lmer.R'
  Running 'nlmer-conv.R'
  Running 'nlmer.R'
  Comparing 'nlmer.Rout' to 'nlmer.Rout.save' ...6d5
< > ## TODO: nicer version of this is in  system.file("test-tools.R", package = "Matrix")
30c29
<           lKa  0.227362 0.47682     NaN        
---
>           lKa  0.227357 0.47682     NaN        
32c31
<  Residual      0.591714 0.76923                
---
>  Residual      0.591716 0.76923                
39c38
< lCl -3.23553    0.05235  -61.80
---
> lCl -3.23551    0.05235  -61.80
58c57
<  Subject  lKa  0.227494 0.47696 
---
>  Subject  lKa  0.227493 0.47696 
60c59
<  Residual      0.591690 0.76921 
---
>  Residual      0.591689 0.76921 
67c66
< lCl -3.23540    0.05236  -61.79
---
> lCl -3.23539    0.05236  -61.79
  Running 'simulate.R'
** running tests for arch 'x64' OK
  Running 'Gamma.R'
  Running 'drop.R'
  Running 'extras.R'
  Running 'lmer-1.R'
  Comparing 'lmer-1.Rout' to 'lmer-1.Rout.save' ... OK
  Running 'lmer-conv.R'
  Running 'lmer.R'
  Running 'nlmer-conv.R'
  Running 'nlmer.R'
  Comparing 'nlmer.Rout' to 'nlmer.Rout.save' ...6d5
< > ## TODO: nicer version of this is in  system.file("test-tools.R", package = "Matrix")
29,32c28,31
<  Subject  lKe  4.3410e-15 6.5886e-08               
<           lKa  2.2736e-01 4.7682e-01  0.000        
<           lCl  1.5722e-02 1.2539e-01  0.000 -0.012 
<  Residual      5.9172e-01 7.6923e-01               
---
>  Subject  lKe  0.000000 0.00000                
>           lKa  0.227357 0.47682     NaN        
>           lCl  0.015722 0.12539     NaN -0.012 
>  Residual      0.591716 0.76923                
58,59c57,58
<  Subject  lKa  0.227495 0.47696 
<  Subject  lCl  0.015739 0.12545 
---
>  Subject  lKa  0.227493 0.47696 
>  Subject  lCl  0.015738 0.12545 
67c66
< lCl -3.23537    0.05236  -61.79
---
> lCl -3.23539    0.05236  -61.79
  Running 'simulate.R'
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... OK
* checking re-building of vignettes ... OK
* checking PDF version of manual ... OK