* using log directory 'd:/Rcompile/CRANpkg/local/2.13/mboost.Rcheck' * using R version 2.13.2 (2011-09-30) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'mboost/DESCRIPTION' ... OK * this is package 'mboost' version '2.1-1' * checking package namespace information ... OK * checking package dependencies ... NOTE Package suggested but not available for checking: multicore * checking if this is a source package ... OK * checking whether package 'mboost' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE cvrisk: no visible binding for global variable 'mclapply' stabsel: no visible binding for global variable 'mclapply' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Package(s) unavailable to check Rd xrefs: 'multicore' * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable compilation flags in Makevars ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking sizes of PDF files under inst/doc ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** checking differences from 'mboost-Ex_i386.Rout' to 'mboost-Ex.Rout.save' ... 254c254 < 1.82015201 -0.02260988 --- > 1.82015195 -0.02260988 260c260 < [1] 2.052033e-08 --- > [1] 7.571584e-08 263c263 < [1] 3.927625e-12 --- > [1] 2.815168e-13 411c411 < -0.1298897804 0.0003555854 --- > -0.1298897900 0.0003555856 429c429 < -0.1298897992 --- > -0.1298898010 591c591 < [1] 9.094947e-12 --- > [1] 2.006573e-11 951c951 < Degrees of freedom (for mstop = 24): 4.481722 --- > Degrees of freedom (for mstop = 24): 4.481737 1349,1350c1349,1350 < [ 1] ...................................... -- risk: 10338.67 < [ 41] ...................................... -- risk: 10159.83 --- > [ 1] ...................................... -- risk: 10338.66 > [ 41] ...................................... -- risk: 10159.82 1352c1352 < Final risk: 10094.04 --- > Final risk: 10094.03 1374c1374 < [101] ...................................... -- risk: 9976.167 --- > [101] ...................................... -- risk: 9976.16 1376c1376 < Final risk: 9948.546 --- > Final risk: 9948.539 1382,1415c1382,1415 < [ 151] ...................................... -- risk: 9843.546 < [ 191] ...................................... -- risk: 9745.991 < [ 231] ...................................... -- risk: 9654.791 < [ 271] ...................................... -- risk: 9569.223 < [ 311] ...................................... -- risk: 9488.74 < [ 351] ...................................... -- risk: 9412.895 < [ 391] ...................................... -- risk: 9341.311 < [ 431] ...................................... -- risk: 9273.659 < [ 471] ...................................... -- risk: 9209.649 < [ 511] ...................................... -- risk: 9149.021 < [ 551] ...................................... -- risk: 9091.541 < [ 591] ...................................... -- risk: 9036.997 < [ 631] ...................................... -- risk: 8985.196 < [ 671] ...................................... -- risk: 8935.959 < [ 711] ...................................... -- risk: 8889.126 < [ 751] ...................................... -- risk: 8844.545 < [ 791] ...................................... -- risk: 8802.079 < [ 831] ...................................... -- risk: 8761.6 < [ 871] ...................................... -- risk: 8722.99 < [ 911] ...................................... -- risk: 8686.14 < [ 951] ...................................... -- risk: 8650.946 < [ 991] ...................................... -- risk: 8617.314 < [1'031] ...................................... -- risk: 8585.156 < [1'071] ...................................... -- risk: 8554.389 < [1'111] ...................................... -- risk: 8524.936 < [1'151] ...................................... -- risk: 8496.724 < [1'191] ...................................... -- risk: 8469.686 < [1'231] ...................................... -- risk: 8443.759 < [1'271] ...................................... -- risk: 8418.884 < [1'311] ...................................... -- risk: 8395.004 < [1'351] ...................................... -- risk: 8372.068 < [1'391] ...................................... -- risk: 8350.027 < [1'431] ...................................... -- risk: 8328.833 < [1'471] ...................................... -- risk: 8308.444 --- > [ 151] ...................................... -- risk: 9843.537 > [ 191] ...................................... -- risk: 9745.981 > [ 231] ...................................... -- risk: 9654.78 > [ 271] ...................................... -- risk: 9569.212 > [ 311] ...................................... -- risk: 9488.728 > [ 351] ...................................... -- risk: 9412.882 > [ 391] ...................................... -- risk: 9341.297 > [ 431] ...................................... -- risk: 9273.645 > [ 471] ...................................... -- risk: 9209.634 > [ 511] ...................................... -- risk: 9149.006 > [ 551] ...................................... -- risk: 9091.526 > [ 591] ...................................... -- risk: 9036.982 > [ 631] ...................................... -- risk: 8985.181 > [ 671] ...................................... -- risk: 8935.944 > [ 711] ...................................... -- risk: 8889.11 > [ 751] ...................................... -- risk: 8844.529 > [ 791] ...................................... -- risk: 8802.064 > [ 831] ...................................... -- risk: 8761.585 > [ 871] ...................................... -- risk: 8722.975 > [ 911] ...................................... -- risk: 8686.124 > [ 951] ...................................... -- risk: 8650.931 > [ 991] ...................................... -- risk: 8617.299 > [1'031] ...................................... -- risk: 8585.141 > [1'071] ...................................... -- risk: 8554.374 > [1'111] ...................................... -- risk: 8524.921 > [1'151] ...................................... -- risk: 8496.709 > [1'191] ...................................... -- risk: 8469.672 > [1'231] ...................................... -- risk: 8443.745 > [1'271] ...................................... -- risk: 8418.87 > [1'311] ...................................... -- risk: 8394.99 > [1'351] ...................................... -- risk: 8372.054 > [1'391] ...................................... -- risk: 8350.013 > [1'431] ...................................... -- risk: 8328.82 > [1'471] ...................................... -- risk: 8308.431 1417c1417 < Final risk: 8289.301 --- > Final risk: 8289.288 1420c1420 < -36.995015 -35.596203 -34.085118 -32.349488 -30.277041 -27.732666 -24.322705 --- > -36.995014 -35.596207 -34.085126 -32.349499 -30.277051 -27.732673 -24.322691 1422c1422 < -20.863451 -21.899778 -19.121766 -6.090494 2.438372 -4.941567 -7.667420 --- > -20.863408 -21.899798 -19.121835 -6.090471 2.438464 -4.941604 -7.667532 1424c1424 < 2.660112 16.107870 12.731680 6.129816 7.150954 15.682249 30.314972 --- > 2.660072 16.107960 12.731713 6.129780 7.150886 15.682172 30.314925 1426c1426 < 47.848824 52.733346 46.576854 --- > 47.848885 52.733403 46.576792 1459,1462c1459,1462 < [1] -0.02478712 -0.01925256 0.07735508 0.24268927 0.39127892 0.49333022 < [7] 0.58205157 0.65523850 0.67973447 0.64955713 0.60211201 0.54410925 < [13] 0.44971269 0.34981917 0.33270627 0.36324092 0.37184590 0.37876606 < [19] 0.39836924 0.42301411 0.36842335 0.22804995 --- > [1] -0.02478725 -0.01925279 0.07735492 0.24268927 0.39127901 0.49333025 > [7] 0.58205156 0.65523852 0.67973446 0.64955704 0.60211196 0.54410924 > [13] 0.44971260 0.34981894 0.33270613 0.36324101 0.37184615 0.37876648 > [19] 0.39836988 0.42301499 0.36842422 0.22805053 1466c1466 < 3.775258 --- > 3.775259 1481,1484c1481,1484 < [1] -0.02478712 -0.01925256 0.07735508 0.24268927 0.39127892 0.49333022 < [7] 0.58205157 0.65523850 0.67973447 0.64955713 0.60211201 0.54410925 < [13] 0.44971269 0.34981917 0.33270627 0.36324092 0.37184590 0.37876606 < [19] 0.39836924 0.42301411 0.36842335 0.22804995 --- > [1] -0.02478725 -0.01925279 0.07735492 0.24268927 0.39127901 0.49333025 > [7] 0.58205156 0.65523852 0.67973446 0.64955704 0.60211196 0.54410924 > [13] 0.44971260 0.34981894 0.33270613 0.36324101 0.37184615 0.37876648 > [19] 0.39836988 0.42301499 0.36842422 0.22805053 1488c1488 < 3.775258 --- > 3.775259 1506,1509c1506,1509 < [1] -0.02478712 -0.01925256 0.07735508 0.24268927 0.39127892 0.49333022 < [7] 0.58205157 0.65523850 0.67973447 0.64955713 0.60211201 0.54410925 < [13] 0.44971269 0.34981917 0.33270627 0.36324092 0.37184590 0.37876606 < [19] 0.39836924 0.42301411 0.36842335 0.22804995 --- > [1] -0.02478725 -0.01925279 0.07735492 0.24268927 0.39127901 0.49333025 > [7] 0.58205156 0.65523852 0.67973446 0.64955704 0.60211196 0.54410924 > [13] 0.44971260 0.34981894 0.33270613 0.36324101 0.37184615 0.37876648 > [19] 0.39836988 0.42301499 0.36842422 0.22805053 1513c1513 < 3.775258 --- > 3.775259 2120c2120 < 1093.549 --- > 1093.545 2600c2600 < 140.4451 --- > 140.4455 OK ** running examples for arch 'x64' ... OK ** checking differences from 'mboost-Ex_x64.Rout' to 'mboost-Ex.Rout.save' ... 254c254 < 1.82015198 -0.02260988 --- > 1.82015195 -0.02260988 260c260 < [1] 4.964133e-08 --- > [1] 7.571584e-08 263c263 < [1] 7.967932e-12 --- > [1] 2.815168e-13 OK * checking for unstated dependencies in tests ... OK * checking tests ... ** running tests for arch 'i386' OK Running 'birds_Biometrics.R' Comparing 'birds_Biometrics.Rout' to 'birds_Biometrics.Rout.save' ...181c181 < [ 161] ...................................... -- risk: 130.305 --- > [ 161] ...................................... -- risk: 130.3049 198c198 < 0.778022847 -0.002811598 --- > 0.778022823 -0.002811598 202c202 < 0.59371226 -0.01241289 --- > 0.59371220 -0.01241289 210c210 < -1.71264920 0.01108683 --- > -1.71264915 0.01108683 234,236c234,236 < [ 241] ...................................... -- risk: 456.1802 < [ 281] ...................................... -- risk: 455.1545 < [ 321] ...................................... -- risk: 454.2507 --- > [ 241] ...................................... -- risk: 456.1801 > [ 281] ...................................... -- risk: 455.1544 > [ 321] ...................................... -- risk: 454.2506 254,265c254,265 < [ 1] ...................................... -- risk: 502.0303 < [ 41] ...................................... -- risk: 494.1493 < [ 81] ...................................... -- risk: 490.0277 < [ 121] ...................................... -- risk: 487.4496 < [ 161] ...................................... -- risk: 485.6646 < [ 201] ...................................... -- risk: 484.3156 < [ 241] ...................................... -- risk: 483.2212 < [ 281] ...................................... -- risk: 482.3222 < [ 321] ...................................... -- risk: 481.5232 < [ 361] ...................................... -- risk: 480.7767 < [ 401] ...................................... -- risk: 480.0901 < [ 441] ...................................... -- risk: 479.5037 --- > [ 1] ...................................... -- risk: 502.0305 > [ 41] ...................................... -- risk: 494.1495 > [ 81] ...................................... -- risk: 490.0279 > [ 121] ...................................... -- risk: 487.4498 > [ 161] ...................................... -- risk: 485.6648 > [ 201] ...................................... -- risk: 484.3158 > [ 241] ...................................... -- risk: 483.2213 > [ 281] ...................................... -- risk: 482.3224 > [ 321] ...................................... -- risk: 481.5234 > [ 361] ...................................... -- risk: 480.7769 > [ 401] ...................................... -- risk: 480.0903 > [ 441] ...................................... -- risk: 479.5039 267c267 < Final risk: 479.2248 --- > Final risk: 479.225 Running 'bugfixes.R' Comparing 'bugfixes.Rout' to 'bugfixes.Rout.save' ... OK Running 'mboost_illustrations.R' Comparing 'mboost_illustrations.Rout' to 'mboost_illustrations.Rout.save' ... OK Running 'regtest-baselearner.R' Comparing 'regtest-baselearner.Rout' to 'regtest-baselearner.Rout.save' ...307,315c307,315 < [1] 0.730895171 0.038870922 -0.005399569 -0.148991281 -0.329031840 < [6] -0.220643444 0.154919020 -0.300950311 -0.873054991 -0.519028732 < [11] 0.320637179 -0.303918059 -0.610811537 -0.686367706 0.342235456 < [16] 0.015554696 -0.135101120 -0.315273962 -0.092935904 0.357645322 < [21] 0.403799615 0.601384744 -0.296924404 0.084490869 0.416705690 < [26] 0.448347137 0.462026108 -0.277978035 -0.008355033 -0.223355153 < [31] 0.100481865 -0.072720712 -0.172365196 -0.347188904 -0.542295914 < [36] -0.091497556 -0.110402447 -0.062103717 -0.042659116 -0.315372175 < [41] -0.037990696 0.207814428 0.200650463 0.012818782 0.038118949 --- > [1] 0.730895170 0.038870922 -0.005399569 -0.148991281 -0.329031839 > [6] -0.220643444 0.154919020 -0.300950310 -0.873054989 -0.519028732 > [11] 0.320637178 -0.303918057 -0.610811536 -0.686367706 0.342235455 > [16] 0.015554696 -0.135101119 -0.315273961 -0.092935903 0.357645321 > [21] 0.403799615 0.601384744 -0.296924402 0.084490869 0.416705690 > [26] 0.448347137 0.462026107 -0.277978034 -0.008355033 -0.223355153 > [31] 0.100481865 -0.072720712 -0.172365196 -0.347188904 -0.542295913 > [36] -0.091497556 -0.110402447 -0.062103717 -0.042659116 -0.315372174 > [41] -0.037990696 0.207814428 0.200650463 0.012818782 0.038118948 317,319c317,319 < [51] -0.026317909 -0.006505122 0.063325194 -0.152492547 0.051858835 < [56] 0.052133940 0.023312796 0.310295070 -0.133932734 0.119637727 < [61] -0.371533883 0.042400169 0.125771268 -0.689991471 -0.022849336 --- > [51] -0.026317909 -0.006505122 0.063325194 -0.152492546 0.051858834 > [56] 0.052133940 0.023312796 0.310295069 -0.133932733 0.119637727 > [61] -0.371533883 0.042400169 0.125771267 -0.689991470 -0.022849336 321,325c321,325 < [71] 0.347018048 0.154893844 -0.104385886 0.829366071 0.433741504 < [76] 0.219947980 -0.012472865 0.378273519 0.385671821 0.105267425 < [81] -0.332167839 -0.332316112 0.664484861 -0.063076836 -0.368592581 < [86] -0.935470908 0.587630225 -0.036879027 -0.193482916 -1.010237013 < [91] 0.429416563 -0.011876975 -0.009186625 -0.599968165 0.438317733 --- > [71] 0.347018048 0.154893844 -0.104385886 0.829366071 0.433741503 > [76] 0.219947980 -0.012472866 0.378273519 0.385671821 0.105267425 > [81] -0.332167838 -0.332316111 0.664484860 -0.063076836 -0.368592580 > [86] -0.935470906 0.587630224 -0.036879027 -0.193482915 -1.010237011 > [91] 0.429416562 -0.011876975 -0.009186625 -0.599968164 0.438317732 341c341 < [10,] -0.190650493 --- > [10,] -0.190650492 402c402 < [1] -0.9167359 --- > [1] -0.9167353 Running 'regtest-blackboost.R' Comparing 'regtest-blackboost.Rout' to 'regtest-blackboost.Rout.save' ...53,67c53,67 < 1 74.4121 nan 0.1000 nan < 2 65.6474 nan 0.1000 nan < 3 58.7034 nan 0.1000 nan < 4 52.6088 nan 0.1000 nan < 5 47.5788 nan 0.1000 nan < 6 43.1559 nan 0.1000 nan < 7 39.3997 nan 0.1000 nan < 8 35.9511 nan 0.1000 nan < 9 33.1632 nan 0.1000 nan < 10 30.6850 nan 0.1000 nan < 100 6.8694 nan 0.1000 nan < 200 5.0890 nan 0.1000 nan < 300 3.9605 nan 0.1000 nan < 400 3.2681 nan 0.1000 nan < 500 2.7537 nan 0.1000 nan --- > 1 74.4121 -nan 0.1000 -nan > 2 65.6474 -nan 0.1000 -nan > 3 58.7034 -nan 0.1000 -nan > 4 52.6088 -nan 0.1000 -nan > 5 47.5788 -nan 0.1000 -nan > 6 43.1559 -nan 0.1000 -nan > 7 39.3997 -nan 0.1000 -nan > 8 35.9511 -nan 0.1000 -nan > 9 33.1632 -nan 0.1000 -nan > 10 30.6850 -nan 0.1000 -nan > 100 6.8694 -nan 0.1000 -nan > 200 5.0890 -nan 0.1000 -nan > 300 3.9605 -nan 0.1000 -nan > 400 3.2681 -nan 0.1000 -nan > 500 2.7537 -nan 0.1000 -nan Running 'regtest-family.R' Comparing 'regtest-family.Rout' to 'regtest-family.Rout.save' ... OK Running 'regtest-gamboost.R' Comparing 'regtest-gamboost.Rout' to 'regtest-gamboost.Rout.save' ...36c36 < [1] 6.625437 --- > [1] 6.625438 38c38 < Degrees of freedom (for mstop = 34): 5.056182 --- > Degrees of freedom (for mstop = 34): 5.056199 208c208 < [12,] 0.3426994 --- > [12,] 0.3426993 224,235c224,235 < [1,] 5.059375e-01 9.071417e-01 0.9992658 < [2,] 5.963551e-02 6.681175e-01 0.9969654 < [3,] 4.438008e-03 4.607472e-01 0.9941774 < [4,] 7.105703e-05 2.550525e-01 0.9897566 < [5,] 3.469722e-16 6.147551e-03 0.9623562 < [6,] 1.012072e-27 1.376472e-04 0.9351947 < [7,] 2.348574e-40 2.145802e-06 0.9063236 < [8,] 7.383737e-58 6.731226e-09 0.8677950 < [9,] 1.953648e-78 7.669664e-12 0.8245871 < [10,] 6.155754e-102 3.335810e-15 0.7778646 < [11,] 1.619543e-141 7.275178e-21 0.7050833 < [12,] 4.904272e-189 1.161265e-27 0.6266419 --- > [1,] 5.059374e-01 9.071417e-01 0.9992658 > [2,] 5.963542e-02 6.681175e-01 0.9969654 > [3,] 4.437993e-03 4.607471e-01 0.9941774 > [4,] 7.105658e-05 2.550524e-01 0.9897566 > [5,] 3.469611e-16 6.147540e-03 0.9623562 > [6,] 1.012013e-27 1.376467e-04 0.9351947 > [7,] 2.348370e-40 2.145790e-06 0.9063236 > [8,] 7.382807e-58 6.731171e-09 0.8677950 > [9,] 1.953311e-78 7.669578e-12 0.8245871 > [10,] 6.154361e-102 3.335760e-15 0.7778646 > [11,] 1.619033e-141 7.275027e-21 0.7050833 > [12,] 4.902193e-189 1.161233e-27 0.6266419 319c319,326 < > newData <- as.data.frame(rbind(colMeans(bodyfat)[-2], colMeans(bodyfat)[-2]+1*sapply(bodyfat, sd)[-2])) --- > > newData <- as.data.frame(rbind(mean(bodyfat)[-2], mean(bodyfat)[-2]+1*sd(bodyfat)[-2])) > Warning messages: > 1: mean() is deprecated. > Use colMeans() or sapply(*, mean) instead. > 2: mean() is deprecated. > Use colMeans() or sapply(*, mean) instead. > 3: sd() is deprecated. > Use sapply(*, sd) instead. Running 'regtest-glmboost.R' Comparing 'regtest-glmboost.Rout' to 'regtest-glmboost.Rout.save' ...300c300,307 < > newData <- as.data.frame(rbind(colMeans(DF)[-1], colMeans(DF)[-2]+1*sapply(DF, sd)[-1])) --- > > newData <- as.data.frame(rbind(mean(DF)[-1], mean(DF)[-2]+1*sd(DF)[-1])) > Warning messages: > 1: mean() is deprecated. > Use colMeans() or sapply(*, mean) instead. > 2: mean() is deprecated. > Use colMeans() or sapply(*, mean) instead. > 3: sd() is deprecated. > Use sapply(*, sd) instead. Running 'regtest-hatmatrix.R' Comparing 'regtest-hatmatrix.Rout' to 'regtest-hatmatrix.Rout.save' ... OK ** running tests for arch 'x64' OK Running 'birds_Biometrics.R' Comparing 'birds_Biometrics.Rout' to 'birds_Biometrics.Rout.save' ... OK Running 'bugfixes.R' Comparing 'bugfixes.Rout' to 'bugfixes.Rout.save' ... OK Running 'mboost_illustrations.R' Comparing 'mboost_illustrations.Rout' to 'mboost_illustrations.Rout.save' ... OK Running 'regtest-baselearner.R' Comparing 'regtest-baselearner.Rout' to 'regtest-baselearner.Rout.save' ... OK Running 'regtest-blackboost.R' Comparing 'regtest-blackboost.Rout' to 'regtest-blackboost.Rout.save' ...53,67c53,67 < 1 74.4121 nan 0.1000 nan < 2 65.6474 nan 0.1000 nan < 3 58.7034 nan 0.1000 nan < 4 52.6088 nan 0.1000 nan < 5 47.5788 nan 0.1000 nan < 6 43.1559 nan 0.1000 nan < 7 39.3997 nan 0.1000 nan < 8 35.9511 nan 0.1000 nan < 9 33.1632 nan 0.1000 nan < 10 30.6850 nan 0.1000 nan < 100 6.8694 nan 0.1000 nan < 200 5.0890 nan 0.1000 nan < 300 3.9605 nan 0.1000 nan < 400 3.2681 nan 0.1000 nan < 500 2.7537 nan 0.1000 nan --- > 1 74.4121 -nan 0.1000 -nan > 2 65.6474 -nan 0.1000 -nan > 3 58.7034 -nan 0.1000 -nan > 4 52.6088 -nan 0.1000 -nan > 5 47.5788 -nan 0.1000 -nan > 6 43.1559 -nan 0.1000 -nan > 7 39.3997 -nan 0.1000 -nan > 8 35.9511 -nan 0.1000 -nan > 9 33.1632 -nan 0.1000 -nan > 10 30.6850 -nan 0.1000 -nan > 100 6.8694 -nan 0.1000 -nan > 200 5.0890 -nan 0.1000 -nan > 300 3.9605 -nan 0.1000 -nan > 400 3.2681 -nan 0.1000 -nan > 500 2.7537 -nan 0.1000 -nan Running 'regtest-family.R' Comparing 'regtest-family.Rout' to 'regtest-family.Rout.save' ... OK Running 'regtest-gamboost.R' Comparing 'regtest-gamboost.Rout' to 'regtest-gamboost.Rout.save' ...319c319,326 < > newData <- as.data.frame(rbind(colMeans(bodyfat)[-2], colMeans(bodyfat)[-2]+1*sapply(bodyfat, sd)[-2])) --- > > newData <- as.data.frame(rbind(mean(bodyfat)[-2], mean(bodyfat)[-2]+1*sd(bodyfat)[-2])) > Warning messages: > 1: mean() is deprecated. > Use colMeans() or sapply(*, mean) instead. > 2: mean() is deprecated. > Use colMeans() or sapply(*, mean) instead. > 3: sd() is deprecated. > Use sapply(*, sd) instead. Running 'regtest-glmboost.R' Comparing 'regtest-glmboost.Rout' to 'regtest-glmboost.Rout.save' ...300c300,307 < > newData <- as.data.frame(rbind(colMeans(DF)[-1], colMeans(DF)[-2]+1*sapply(DF, sd)[-1])) --- > > newData <- as.data.frame(rbind(mean(DF)[-1], mean(DF)[-2]+1*sd(DF)[-1])) > Warning messages: > 1: mean() is deprecated. > Use colMeans() or sapply(*, mean) instead. > 2: mean() is deprecated. > Use colMeans() or sapply(*, mean) instead. > 3: sd() is deprecated. > Use sapply(*, sd) instead. Running 'regtest-hatmatrix.R' Comparing 'regtest-hatmatrix.Rout' to 'regtest-hatmatrix.Rout.save' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... OK * checking re-building of vignettes ... OK * checking PDF version of manual ... OK