* using log directory 'd:/Rcompile/CRANpkg/local/2.13/mlmRev.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'mlmRev/DESCRIPTION' ... OK
* this is package 'mlmRev' version '1.0-1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'mlmRev' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under inst/doc ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ... OK
  Running 'guImmun.R'
  Comparing 'guImmun.Rout' to 'guImmun.Rout.save' ...5,20d4
< Attaching package: 'Matrix'
< 
< The following object(s) are masked from 'package:base':
< 
<     det
< 
< 
< Attaching package: 'lme4'
< 
< The following object(s) are masked from 'package:stats':
< 
<     AIC, BIC
< 
< Warning message:
< In loadNamespace(package, c(which.lib.loc, lib.loc), keep.source = keep.source) :
<   package 'mlmRev' contains no R code
34c18
<  mom    (Intercept) 1.288    1.1348  
---
>  mom    (Intercept) 1.288    1.1349  
42c26
< mom25pY      -0.1284     0.1543   -0.83   0.4054    
---
> mom25pY      -0.1284     0.1543   -0.83   0.4055    
44c28
< ord46         0.1740     0.1992    0.87   0.3821    
---
> ord46         0.1740     0.1992    0.87   0.3822    
55c39
< pcInd81      -0.8573     0.3257   -2.63   0.0085 ** 
---
> pcInd81      -0.8572     0.3257   -2.63   0.0085 ** 
89c73
<  mom    (Intercept) 1.2763   1.130   
---
>  mom    (Intercept) 1.2762   1.130   
97,102c81,86
< mom25pY      -0.1360     0.1537   -0.88  0.37647    
< ord23        -0.1374     0.1605   -0.86  0.39174    
< ord46         0.1556     0.1977    0.79  0.43138    
< ord7p         0.2404     0.2464    0.98  0.32908    
< ethnN        -0.2205     0.3095   -0.71  0.47612    
< ethnS        -0.0784     0.2311   -0.34  0.73446    
---
> mom25pY      -0.1359     0.1537   -0.88  0.37652    
> ord23        -0.1375     0.1605   -0.86  0.39166    
> ord46         0.1556     0.1977    0.79  0.43148    
> ord7p         0.2404     0.2464    0.98  0.32913    
> ethnN        -0.2206     0.3095   -0.71  0.47600    
> ethnS        -0.0784     0.2311   -0.34  0.73438    
104c88
< momEdS        0.3875     0.2766    1.40  0.16117    
---
> momEdS        0.3876     0.2766    1.40  0.16115    
106,107c90,91
< ruralY       -0.6966     0.1945   -3.58  0.00034 ***
< pcInd81      -0.8355     0.3251   -2.57  0.01017 *  
---
> ruralY       -0.6965     0.1945   -3.58  0.00034 ***
> pcInd81      -0.8354     0.3251   -2.57  0.01018 *  
128,133c112,117
< kid2pY        1.2680     0.1357    9.35  < 2e-16 ***
< mom25pY       0.0259     0.1163    0.22  0.82401    
< ethnN        -0.2173     0.3068   -0.71  0.47890    
< ethnS        -0.0812     0.2294   -0.35  0.72321    
< momEdP        0.3339     0.1366    2.44  0.01452 *  
< momEdS        0.3266     0.2708    1.21  0.22777    
---
> kid2pY        1.2679     0.1357    9.35  < 2e-16 ***
> mom25pY       0.0258     0.1163    0.22  0.82405    
> ethnN        -0.2172     0.3068   -0.71  0.47896    
> ethnS        -0.0812     0.2294   -0.35  0.72324    
> momEdP        0.3339     0.1366    2.44  0.01453 *  
> momEdS        0.3266     0.2708    1.21  0.22778    
136c120
< pcInd81      -0.8367     0.3220   -2.60  0.00937 ** 
---
> pcInd81      -0.8366     0.3220   -2.60  0.00938 ** 
  Running 'lmerTest.R'
  Comparing 'lmerTest.Rout' to 'lmerTest.Rout.save' ...6,21d5
< Attaching package: 'Matrix'
< 
< The following object(s) are masked from 'package:base':
< 
<     det
< 
< 
< Attaching package: 'lme4'
< 
< The following object(s) are masked from 'package:stats':
< 
<     AIC, BIC
< 
< Warning message:
< In loadNamespace(package, c(which.lib.loc, lib.loc), keep.source = keep.source) :
<   package 'mlmRev' contains no R code
181c165
< fm3  7 16519 16567  -8253   0.0      0          1
---
> fm3  7 16519 16567  -8253   0.0      0     <2e-16
222,223c206,207
<  school   (Intercept) 0.08583  0.293   
<  Residual             0.56253  0.750   
---
>  school   (Intercept) 0.08583  0.2930  
>  Residual             0.56253  0.7500  
364c348
< fm08 12 649.4 690.8 -312.7     0      0     <2e-16
---
> fm08 12 649.4 690.8 -312.7 1.68e-06      0     <2e-16
366c350
< +                     logLik(fm08, REML=FALSE), tol=1e-07))
---
> +                     logLik(fm08, REML=FALSE)))
446c430
<  primary  (Intercept) 0.26859  0.5183          
---
>  primary  (Intercept) 0.26860  0.5183          
  Running 'versions.R'
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... OK
* checking re-building of vignettes ... OK
* checking PDF version of manual ... OK