* using log directory 'd:/Rcompile/CRANpkg/local/2.13/mosaicManip.Rcheck' * using R version 2.13.2 (2011-09-30) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'mosaicManip/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'mosaicManip' version '0.2-6' * checking package namespace information ... OK * checking package dependencies ... NOTE Package suggested but not available for checking: manipulate * checking if this is a source package ... OK * checking whether package 'mosaicManip' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .mEulerIntegrate.core : draw.state: no visible binding for '<<-' assignment to '..thisfun' .mEulerIntegrate.core: no visible global function definition for 'manipulate' .mEulerIntegrate.core: no visible binding for global variable 'dynfun' .mEulerIntegrate.core: no visible binding for global variable 'xval0' .mEulerIntegrate.core: no visible binding for global variable 'ntraj' .mEulerIntegrate.core: no visible binding for global variable 'go' .mEulerIntegrate.core: no visible binding for global variable 'nsteps' .mEulerIntegrate.core: no visible binding for global variable 'showeq' .mEulerIntegrate.core: no visible binding for global variable 'editfun' .mEulerIntegrate.core: no visible global function definition for 'picker' .mEulerIntegrate.core: no visible global function definition for 'button' .mEulerIntegrate.core: no visible global function definition for 'slider' .mEulerIntegrate.core: no visible global function definition for 'checkbox' .mGradSearch.core: no visible binding for '<<-' assignment to '.global.fun' .mGradSearch.core: no visible binding for '<<-' assignment to 'ptsX' .mGradSearch.core: no visible binding for '<<-' assignment to 'ptsY' .mGradSearch.core : drawState: no visible binding for global variable 'ptsX' .mGradSearch.core : drawState: no visible binding for global variable 'ptsY' .mGradSearch.core : drawState: no visible binding for '<<-' assignment to 'ptsX' .mGradSearch.core : drawState: no visible binding for '<<-' assignment to 'ptsY' .mGradSearch.core : drawState: no visible global function definition for 'manipulatorMouseClick' .mGradSearch.core: no visible global function definition for 'manipulate' .mGradSearch.core: no visible binding for global variable 'ty' .mGradSearch.core: no visible binding for global variable 'trans' .mGradSearch.core: no visible binding for global variable 'cent' .mGradSearch.core: no visible binding for global variable 'contours' .mGradSearch.core: no visible global function definition for 'picker' .mGradSearch.core: no visible global function definition for 'slider' .mGradSearch.core: no visible global function definition for 'button' .mGradSearch.core: no visible global function definition for 'checkbox' mApproxPoly2: no visible global function definition for 'manipulate' mApproxPoly2: no visible binding for global variable 'xpt' mApproxPoly2: no visible binding for global variable 'ypt' mApproxPoly2: no visible binding for global variable 'radius' mApproxPoly2: no visible binding for global variable 'const' mApproxPoly2: no visible binding for global variable 'xyes' mApproxPoly2: no visible binding for global variable 'yyes' mApproxPoly2: no visible binding for global variable 'xyyes' mApproxPoly2: no visible binding for global variable 'xsqyes' mApproxPoly2: no visible binding for global variable 'ysqyes' mApproxPoly2: no visible binding for global variable 'myalpha' mApproxPoly2: no visible binding for global variable 'npts' mApproxPoly2: no visible global function definition for 'slider' mApproxPoly2: no visible global function definition for 'checkbox' mBayesBinom: no visible global function definition for 'manipulate' mBayesBinom: no visible binding for global variable 'pick.prior' mBayesBinom: no visible binding for global variable 'samp.size' mBayesBinom: no visible binding for global variable 'log.yaxis' mBayesBinom: no visible global function definition for 'picker' mBayesBinom: no visible global function definition for 'slider' mBayesBinom: no visible global function definition for 'checkbox' mBias: no visible global function definition for 'slider' mBias: no visible global function definition for 'checkbox' mBias: no visible global function definition for 'manipulate' mBias: no visible binding for global variable 'n' mBias: no visible binding for global variable 'seed' mBias: no visible binding for global variable 'use.orig' mCIprop: no visible global function definition for 'manipulate' mCIprop: no visible binding for global variable 'n' mCIprop: no visible binding for global variable 'conf.level' mCIprop: no visible binding for global variable 'p' mCIprop: no visible binding for global variable 'ntrials' mCIprop: no visible binding for global variable 'seed' mCIprop: no visible binding for global variable 'int.type' mCIprop: no visible global function definition for 'slider' mCIprop: no visible global function definition for 'picker' mCIt: no visible global function definition for 'manipulate' mCIt: no visible binding for global variable 'N' mCIt: no visible binding for global variable 'SAMPLES' mCIt: no visible binding for global variable 'DIST' mCIt: no visible binding for global variable 'cover' mCIt: no visible binding for global variable 'WIDTH' mCIt: no visible global function definition for 'slider' mCIt: no visible global function definition for 'picker' mDensity: no visible global function definition for 'slider' mDensity: no visible global function definition for 'picker' mDensity: no visible global function definition for 'manipulate' mDensity: no visible binding for global variable 'bandwidth' mDensity: no visible binding for global variable 'trans' mDensity: no visible binding for global variable 'seed' mDensity: no visible binding for global variable 'npts' mDerivs : myplot : antiFpanel: no visible binding for global variable 'pos' mDerivs: no visible global function definition for 'manipulate' mDerivs: no visible binding for global variable 'xpos' mDerivs: no visible binding for global variable 'from' mDerivs: no visible binding for global variable 'der' mDerivs: no visible binding for global variable 'anti' mDerivs: no visible binding for global variable 'fixed' mDerivs: no visible binding for global variable 'cfun' mDerivs: no visible global function definition for 'picker' mDerivs: no visible global function definition for 'slider' mDerivs: no visible global function definition for 'checkbox' mEcon: no visible global function definition for 'manipulate' mEcon: no visible binding for global variable 'sup1' mEcon: no visible binding for global variable 'sup2' mEcon: no visible binding for global variable 'dem1' mEcon: no visible binding for global variable 'dem2' mEcon: no visible global function definition for 'slider' mFit: no visible global function definition for 'checkbox' mFit: no visible global function definition for 'slider' mFit: no visible global function definition for 'manipulate' mFit: no visible binding for global variable 'k' mFit: no visible binding for global variable 'n' mFit: no visible binding for global variable 'P' mGlassPattern: no visible global function definition for 'manipulate' mGlassPattern: no visible binding for global variable 'mag' mGlassPattern: no visible binding for global variable 'dmag' mGlassPattern: no visible binding for global variable 'rot' mGlassPattern: no visible binding for global variable 'xtrans' mGlassPattern: no visible binding for global variable 'ytrans' mGlassPattern: no visible global function definition for 'slider' mGrad: no visible global function definition for 'manipulate' mGrad: no visible binding for global variable 'npts' mGrad: no visible binding for global variable 'delta' mGrad: no visible binding for global variable 'col.scheme' mGrad: no visible binding for global variable 'show.grad' mGrad: no visible binding for global variable 'show.x' mGrad: no visible binding for global variable 'show.y' mGrad: no visible global function definition for 'checkbox' mGrad: no visible global function definition for 'slider' mGrad: no visible global function definition for 'picker' mHist: no visible binding for '<<-' assignment to 'oldBreaks' mHist : myFun : myPan: no visible binding for global variable 'oldBreaks' mHist : myFun: no visible binding for '<<-' assignment to 'oldBreaks' mHist: no visible global function definition for 'slider' mHist: no visible binding for global variable 'x' mHist: no visible global function definition for 'manipulate' mHist: no visible binding for global variable 'nBands' mHist: no visible binding for global variable 'cBreak' mHist: no visible binding for global variable 'seed' mHypTest: no visible global function definition for 'slider' mHypTest: no visible global function definition for 'checkbox' mHypTest : drawIt: multiple local function definitions for 'dnorm' with different formal arguments mHypTest : drawIt: multiple local function definitions for 'pnorm' with different formal arguments mHypTest : drawIt: multiple local function definitions for 'qnorm' with different formal arguments mHypTest: no visible global function definition for 'manipulate' mHypTest: no visible binding for global variable 'effect' mHypTest: no visible binding for global variable 'n' mHypTest: no visible binding for global variable 'm' mHypTest: no visible binding for global variable 'show.alt' mInfluence: no visible global function definition for 'picker' mInfluence: no visible global function definition for 'checkbox' mInfluence: no visible global function definition for 'slider' mInfluence: no visible global function definition for 'manipulate' mInfluence: no visible binding for global variable 'xpick' mInfluence: no visible binding for global variable 'multY' mInfluence: no visible binding for global variable 'multX' mInfluence: no visible binding for global variable 'newPoint' mLM: no visible global function definition for 'picker' mLM: no visible global function definition for 'checkbox' mLM: no visible global function definition for 'manipulate' mLM: no visible binding for global variable 'xname' mLinAlgebra: no visible global function definition for 'slider' mLinAlgebra: no visible global function definition for 'checkbox' mLinAlgebra: no visible global function definition for 'picker' mLinAlgebra: no visible global function definition for 'manipulate' mLinAlgebra: no visible binding for global variable 'az' mLinAlgebra: no visible binding for global variable 'lookdown' mLinAlgebra: no visible binding for global variable 'hint' mLineFit: no visible global function definition for 'manipulate' mLineFit: no visible global function definition for 'slider' mLineFit: no visible global function definition for 'checkbox' mPP: no visible binding for global variable 'predator.prey' mPP : flowPlot: no visible binding for '<<-' assignment to 'current.dyn.system' mPP : jacobian: no visible binding for global variable 'current.dyn.system' mPP : doPlot: no visible global function definition for 'solveDE' mPP : doPlot : myPanel: no visible global function definition for 'showNullclines' mPP: no visible global function definition for 'manipulate' mPP: no visible binding for global variable 'xstart' mPP: no visible binding for global variable 'ystart' mPP: no visible binding for global variable 'Ntraj' mPP: no visible binding for global variable 'tdur' mPP: no visible binding for global variable 'tback' mPP: no visible binding for global variable 'nullclines' mPP: no visible binding for global variable 'reviseWhat' mPP: no visible binding for global variable 'flowWhat' mPP: no visible binding for global variable 'doJacob' mPP: no visible global function definition for 'slider' mPP: no visible global function definition for 'picker' mPP: no visible global function definition for 'checkbox' mPhaseLine: no visible global function definition for 'manipulate' mPhaseLine: no visible binding for global variable 'x' mPhaseLine: no visible binding for global variable 'field' mPhaseLine: no visible binding for global variable 'npts' mPhaseLine: no visible binding for global variable 'showDyn' mPhaseLine: no visible global function definition for 'slider' mPhaseLine: no visible global function definition for 'checkbox' mPower: no visible global function definition for 'slider' mPower: no visible global function definition for 'manipulate' mPower: no visible binding for global variable 'mu' mPower: no visible binding for global variable 'sigma' mPower: no visible binding for global variable 'n' mSDGame: no visible binding for '<<-' assignment to 'iter' mSDGame : myFun: no visible binding for global variable 'iter' mSDGame : myFun: no visible binding for '<<-' assignment to 'iter' mSDGame: no visible global function definition for 'manipulate' mSDGame: no visible binding for global variable 'guess.sd' mSDGame: no visible binding for global variable 'myDist' mSDGame: no visible binding for global variable 'nxt' mSDGame: no visible global function definition for 'slider' mSDGame: no visible global function definition for 'picker' mSDGame: no visible global function definition for 'checkbox' mSIR: no visible global function definition for 'manipulate' mSIR: no visible binding for global variable 'probInfect' mSIR: no visible binding for global variable 'nContact' mSIR: no visible binding for global variable 'duration' mSIR: no visible binding for global variable 'initialI' mSIR: no visible binding for global variable 'births' mSIR: no visible global function definition for 'slider' mTaylor: no visible global function definition for 'manipulate' mTaylor: no visible binding for global variable 'a' mTaylor: no visible binding for global variable 'TaylorBeTrue' mTaylor: no visible binding for global variable 'lsquares' mTaylor: no visible binding for global variable 'xwid' mTaylor: no visible binding for global variable 'n' mTaylor: no visible binding for global variable 'err' mTaylor: no visible binding for global variable 'which.plot' mTaylor: no visible global function definition for 'picker' mTaylor: no visible global function definition for 'slider' mTaylor: no visible global function definition for 'checkbox' mhistogram: no visible global function definition for 'manipulate' mhistogram: no visible binding for global variable 'N' mhistogram: no visible binding for global variable 'FIT' mhistogram: no visible global function definition for 'slider' mhistogram: no visible global function definition for 'picker' mpoly2 : showFun: no visible binding for '<<-' assignment to '.polyfun' mpoly2: no visible global function definition for 'manipulate' mpoly2: no visible binding for global variable 'a1' mpoly2: no visible binding for global variable 'a2' mpoly2: no visible binding for global variable 'a3' mpoly2: no visible binding for global variable 'a4' mpoly2: no visible binding for global variable 'a5' mpoly2: no visible binding for global variable 'a6' mpoly2: no visible binding for global variable 'xlim' mpoly2: no visible binding for global variable 'surface' mpoly2: no visible global function definition for 'slider' mpoly2: no visible global function definition for 'checkbox' * checking Rd files ... NOTE prepare_Rd: mPower.Rd:10-11: Dropping empty section \arguments prepare_Rd: mSDGame.Rd:10-11: Dropping empty section \arguments prepare_Rd: undocumented.Rd:20-21: Dropping empty section \examples * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK * checking PDF version of manual ... OK