* using log directory 'd:/Rcompile/CRANpkg/local/2.13/nlme.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'nlme/DESCRIPTION' ... OK
* this is package 'nlme' version '3.1-103'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'nlme' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386' OK
  Running 'anova.gls.R'
  Running 'augPred_lab.R'
  Running 'augPredmissing.R'
  Running 'coef.R'
  Running 'contrMat.R'
  Running 'data.frame.R'
  Running 'deparse.R'
  Running 'getData.R'
  Running 'gls.R'
  Running 'lmList.R'
  Running 'lme.R'
  Comparing 'lme.Rout' to 'lme.Rout.save' ...1a2,17
> R Under development (unstable) (2011-07-19 r56420)
> Copyright (C) 2011 The R Foundation for Statistical Computing
> ISBN 3-900051-07-0
> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
> 
> R is free software and comes with ABSOLUTELY NO WARRANTY.
> You are welcome to redistribute it under certain conditions.
> Type 'license()' or 'licence()' for distribution details.
> 
> R is a collaborative project with many contributors.
> Type 'contributors()' for more information and
> 'citation()' on how to cite R or R packages in publications.
> 
> Type 'demo()' for some demos, 'help()' for on-line help, or
> 'help.start()' for an HTML browser interface to help.
> Type 'q()' to quit R.
  Running 'missing.R'
  Comparing 'missing.Rout' to 'missing.Rout.save' ... OK
  Running 'nlme.R'
  Comparing 'nlme.Rout' to 'nlme.Rout.save' ...18c18
< 311 109.98574 -8.558543 -3.362518
---
> 311 109.98575 -8.558543 -3.362518
25c25
< 303 105.71793 -8.906081 -3.222957
---
> 303 105.71792 -8.906081 -3.222957
  Running 'predict.lme.R'
  Running 'update.R'
  Running 'updateLme.R'
  Running 'varIdent.R'
** running tests for arch 'x64' OK
  Running 'anova.gls.R'
  Running 'augPred_lab.R'
  Running 'augPredmissing.R'
  Running 'coef.R'
  Running 'contrMat.R'
  Running 'data.frame.R'
  Running 'deparse.R'
  Running 'getData.R'
  Running 'gls.R'
  Running 'lmList.R'
  Running 'lme.R'
  Comparing 'lme.Rout' to 'lme.Rout.save' ...1a2,17
> R Under development (unstable) (2011-07-19 r56420)
> Copyright (C) 2011 The R Foundation for Statistical Computing
> ISBN 3-900051-07-0
> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
> 
> R is free software and comes with ABSOLUTELY NO WARRANTY.
> You are welcome to redistribute it under certain conditions.
> Type 'license()' or 'licence()' for distribution details.
> 
> R is a collaborative project with many contributors.
> Type 'contributors()' for more information and
> 'citation()' on how to cite R or R packages in publications.
> 
> Type 'demo()' for some demos, 'help()' for on-line help, or
> 'help.start()' for an HTML browser interface to help.
> Type 'q()' to quit R.
  Running 'missing.R'
  Comparing 'missing.Rout' to 'missing.Rout.save' ... OK
  Running 'nlme.R'
  Comparing 'nlme.Rout' to 'nlme.Rout.save' ... OK
  Running 'predict.lme.R'
  Running 'update.R'
  Running 'updateLme.R'
  Running 'varIdent.R'
* checking PDF version of manual ... OK