* using log directory 'd:/Rcompile/CRANpkg/local/2.13/oro.dicom.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'oro.dicom/DESCRIPTION' ... OK
* this is package 'oro.dicom' version '0.3.3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'oro.dicom' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.2Mb
  sub-directories of 1Mb or more:
    hk-40   5.3Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking differences from 'oro.dicom-Ex.Rout' to 'oro.dicom-Ex.Rout.save' ...
3c3
< oro.dicom: Rigorous - DICOM Input / Output (version = 0.3.3)
---
> oro.dicom: Rigorous - DICOM Input / Output (version = 0.3.2)
23,24c23
< > image(dcmImage[,,1], col=grey(0:64/64), axes=FALSE, xlab="", ylab="",
< +       main=paste("First Slice from HK-40"))
---
> > image(dcmImage[,,1], col=grey(0:64/64), axes=FALSE, xlab="", ylab="")
36,37c35
< > image(dcmImage[,,1], col=grey(0:64/64), axes=FALSE, xlab="", ylab="",
< +       main=paste("First Slice from HK-40 (again)"))
---
> > image(dcmImage[,,1], col=grey(0:64/64), axes=FALSE, xlab="", ylab="")
40,43c38,39
< > mosaicFile <- system.file("dcm/MR-sonata-3D-as-Tile.dcm", package="oro.dicom")
< > dcm <- readDICOMFile(mosaicFile)
< > image(dcm$img, col=grey(0:64/64), axes=FALSE, xlab="", ylab="",
< +       main="Siemens MOSAIC")
---
> > dcm <- readDICOMFile(system.file("dcm/MR-sonata-3D-as-Tile.dcm",
> +                      package="oro.dicom"))
45,47c41,42
< > z <- trunc(dim(dcmImage)[3] / 2)
< > image(dcmImage[,,z], col=grey(0:64/64), axes=FALSE, xlab="", ylab="",
< +       main=paste("Slice", z, "from Siemens MOSAIC"))
---
> > image(dcmImage[,,dim(dcmImage)[3]/2], col=grey(0:64/64), axes=FALSE,
> +       xlab="", ylab="")
221,240d215
< > nameEx("readDICOM")
< > ### * readDICOM
< > 
< > flush(stderr()); flush(stdout())
< > 
< > ### Name: readDICOM
< > ### Title: Read All DICOM Files in a Directory
< > ### Aliases: readDICOM dicomSeparate
< > ### Keywords: file
< > 
< > ### ** Examples
< > 
< > ## Not run: 
< > ##D dcmImage <- readDICOM(system.file("hk-40", package="oro.dicom"),
< > ##D                       verbose=TRUE)
< > ## End(Not run)
< > 
< > 
< > 
< > cleanEx()
254,255c229
< > graphics::image(x$img, col=grey(0:64/64), axes=FALSE, xlab="", ylab="",
< +                 main="Abdo.dcm")
---
> > graphics::image(t(x$img), col=grey(0:64/64), axes=FALSE, xlab="", ylab="")
258,259c232
< > graphics::image(x$img, col=grey(0:64/64), axes=FALSE, xlab="", ylab="",
< +                 main="Spine1.dcm")
---
> > graphics::image(t(x$img), col=grey(0:64/64), axes=FALSE, xlab="", ylab="")
 OK
* checking PDF version of manual ... OK