* using log directory 'd:/Rcompile/CRANpkg/local/2.13/pcalg.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'pcalg/DESCRIPTION' ... OK
* this is package 'pcalg' version '1.1-4'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'pcalg' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under inst/doc ... NOTE
  'qpdf' made some significant size reductions:
     compacted 'pcalgDoc.pdf' from 440Kb to 338Kb
  consider running tools::compactPDF() on these files
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ... OK
  Running 'test_amat2dag.R'
  Running 'test_compareGraphs.R'
  Running 'test_dag2cpdag.R'
  Running 'test_dsep.R'
  Running 'test_fci.R'
  Running 'test_gSquareBin.R'
  Running 'test_gSquareDis.R'
  Running 'test_getNextSet.R'
  Running 'test_ida.R'
  Running 'test_idaFast.R'
  Running 'test_pc.R'
  Running 'test_pcAlgo.R'
  Running 'test_pcSelect.R'
  Running 'test_pcorOrder.R'
  Running 'test_pdag2dag.R'
  Running 'test_randomDAG.R'
  Running 'test_rfci.R'
  Running 'test_rmvDAG.R'
  Running 'test_shd.R'
  Running 'test_skeleton.R'
  Running 'test_udag2pag.R'
  Running 'test_udag2pdag.R'
  Running 'test_wgtMatrix.R'
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... OK
* checking re-building of vignettes ... NOTE
Error in re-building vignettes:
  ...
Loading required package: abind
Loading required package: corpcor
Loading required package: sfsmisc
Loading required package: Rgraphviz
Loading required package: graph
Loading required package: grid

(Rterm.exe:6372): Pango-WARNING **: couldn't load font "Times New Not-Rotated 14", falling back to "Sans Not-Rotated 14", expect ugly output.
make[1]: Entering directory `/cygdrive/d/RCompile/CRANpkg/local/2.13/pcalg.Rcheck/vign_test/pcalg/inst/doc'
TEXINPUTS=.;.;;d:/Rcompile/recent/R-2.13.2/share/texmf/tex/latex;;d:/Rcompile/recent/R-2.13.2/share/texmf/tex/latex;:/usr/local/app/R/current/share/texmf// texi2pdf pcalgDoc.tex
Syntax error: ";;" unexpected
make[1]: *** [pcalgDoc.pdf] Error 2
make[1]: Leaving directory `/cygdrive/d/RCompile/CRANpkg/local/2.13/pcalg.Rcheck/vign_test/pcalg/inst/doc'
Error in buildVignettes(dir = "d:/Rcompile/CRANpkg/local/2.13/pcalg.Rcheck/vign_test/pcalg") : 
  running 'make' failed
Execution halted

* checking PDF version of manual ... OK