* using log directory 'd:/Rcompile/CRANpkg/local/2.13/rgenoud.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'rgenoud/DESCRIPTION' ... OK
* this is package 'rgenoud' version '5.7-3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'rgenoud' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
genoud : fnLexicalSort: no visible binding for global variable 'indx'
genoud: multiple local function definitions for 'fn1.bfgs' with
  different formal arguments
genoud: multiple local function definitions for 'gr1' with different
  formal arguments
genoud: multiple local function definitions for 'hess.fn' with
  different formal arguments
genoud_transform : fnLexicalSort: no visible binding for global
  variable 'indx'
genoud_transform: multiple local function definitions for 'fn1.bfgs'
  with different formal arguments
genoud_transform: multiple local function definitions for 'gr1' with
  different formal arguments
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking sizes of PDF files under inst/doc ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386' OK
  Running 'tests.R'
  Comparing 'tests.Rout' to 'tests.Rout.save' ...11c11
< Thu Feb 23 06:42:02 2012
---
> Wed May  4 00:50:43 2011
69,71c69,71
< mean............ 6.096275e-01
< variance........ 4.272226e-01
< #unique......... 405, #Total UniqueCount: 2725
---
> mean............ 6.189650e-01
> variance........ 4.002499e-01
> #unique......... 427, #Total UniqueCount: 2747
74,75c74,75
< mean............ 1.890489e+00
< variance........ 1.054702e+01
---
> mean............ 1.679966e+00
> variance........ 1.119450e+01
79,81c79,81
< mean............ 6.512111e-01
< variance........ 3.851790e-01
< #unique......... 416, #Total UniqueCount: 3141
---
> mean............ 6.092758e-01
> variance........ 4.169687e-01
> #unique......... 431, #Total UniqueCount: 3178
84,85c84,85
< mean............ 1.361283e+00
< variance........ 7.094033e+00
---
> mean............ 1.367527e+00
> variance........ 6.934006e+00
89,91c89,91
< mean............ 5.889137e-01
< variance........ 4.540842e-01
< #unique......... 425, #Total UniqueCount: 3566
---
> mean............ 6.156435e-01
> variance........ 4.200404e-01
> #unique......... 423, #Total UniqueCount: 3601
94,95c94,95
< mean............ 1.302953e+00
< variance........ 6.689053e+00
---
> mean............ 1.366945e+00
> variance........ 6.752356e+00
99,101c99,101
< mean............ 6.736725e-01
< variance........ 3.635173e-01
< #unique......... 387, #Total UniqueCount: 3953
---
> mean............ 6.356096e-01
> variance........ 4.049092e-01
> #unique......... 425, #Total UniqueCount: 4026
104,105c104,105
< mean............ 1.366363e+00
< variance........ 5.366901e+00
---
> mean............ 1.393369e+00
> variance........ 6.402281e+00
109,111c109,111
< mean............ 6.431350e-01
< variance........ 3.888953e-01
< #unique......... 406, #Total UniqueCount: 4359
---
> mean............ 6.164552e-01
> variance........ 4.133295e-01
> #unique......... 431, #Total UniqueCount: 4457
114,115c114,115
< mean............ 1.299767e+00
< variance........ 5.746716e+00
---
> mean............ 1.211458e+00
> variance........ 6.857465e+00
119,121c119,121
< mean............ 6.372908e-01
< variance........ 3.977796e-01
< #unique......... 403, #Total UniqueCount: 4762
---
> mean............ 6.562369e-01
> variance........ 3.846095e-01
> #unique......... 401, #Total UniqueCount: 4858
124,125c124,125
< mean............ 1.311906e+00
< variance........ 6.047898e+00
---
> mean............ 1.391469e+00
> variance........ 6.147332e+00
129,131c129,131
< mean............ 6.385858e-01
< variance........ 4.078118e-01
< #unique......... 419, #Total UniqueCount: 5181
---
> mean............ 6.651051e-01
> variance........ 3.848492e-01
> #unique......... 403, #Total UniqueCount: 5261
134,135c134,135
< mean............ 1.404711e+00
< variance........ 5.615646e+00
---
> mean............ 1.330140e+00
> variance........ 5.689063e+00
139,141c139,141
< mean............ 6.449885e-01
< variance........ 3.908594e-01
< #unique......... 421, #Total UniqueCount: 5602
---
> mean............ 6.208946e-01
> variance........ 4.056497e-01
> #unique......... 435, #Total UniqueCount: 5696
144,145c144,145
< mean............ 1.304838e+00
< variance........ 6.055993e+00
---
> mean............ 1.343203e+00
> variance........ 7.001236e+00
149,151c149,151
< mean............ 6.314848e-01
< variance........ 3.932786e-01
< #unique......... 439, #Total UniqueCount: 6041
---
> mean............ 6.724621e-01
> variance........ 3.550086e-01
> #unique......... 419, #Total UniqueCount: 6115
154,155c154,155
< mean............ 1.340550e+00
< variance........ 5.555145e+00
---
> mean............ 1.282502e+00
> variance........ 5.515707e+00
169,170c169,170
< Thu Feb 23 06:42:05 2012
< Total run time : 0 hours 0 minutes and 3 seconds
---
> Wed May  4 00:50:44 2011
> Total run time : 0 hours 0 minutes and 1 seconds
198c198
< Thu Feb 23 06:42:05 2012
---
> Wed May  4 00:50:44 2011
238c238
< #unique......... 626, #Total UniqueCount: 1626
---
> #unique......... 627, #Total UniqueCount: 1627
248c248
< #unique......... 682, #Total UniqueCount: 2308
---
> #unique......... 682, #Total UniqueCount: 2309
256,258c256,258
< mean............ -6.158385e-01
< variance........ 4.141548e-01
< #unique......... 410, #Total UniqueCount: 2718
---
> mean............ -6.128608e-01
> variance........ 4.144967e-01
> #unique......... 429, #Total UniqueCount: 2738
261,262c261,262
< mean............ 4.050484e+00
< variance........ 7.894210e+00
---
> mean............ 4.007063e+00
> variance........ 7.658184e+00
266,268c266,268
< mean............ -6.071496e-01
< variance........ 4.209873e-01
< #unique......... 438, #Total UniqueCount: 3156
---
> mean............ -6.212577e-01
> variance........ 4.115324e-01
> #unique......... 437, #Total UniqueCount: 3175
271,272c271,272
< mean............ 4.021939e+00
< variance........ 8.389006e+00
---
> mean............ 4.165113e+00
> variance........ 7.042534e+00
276,278c276,278
< mean............ -6.620590e-01
< variance........ 3.616736e-01
< #unique......... 429, #Total UniqueCount: 3585
---
> mean............ -6.544408e-01
> variance........ 3.750827e-01
> #unique......... 411, #Total UniqueCount: 3586
281,282c281,282
< mean............ 3.979958e+00
< variance........ 8.048846e+00
---
> mean............ 4.169934e+00
> variance........ 6.904521e+00
286,288c286,288
< mean............ -6.598122e-01
< variance........ 3.765772e-01
< #unique......... 401, #Total UniqueCount: 3986
---
> mean............ -6.581255e-01
> variance........ 3.650709e-01
> #unique......... 417, #Total UniqueCount: 4003
291,292c291,292
< mean............ 4.111091e+00
< variance........ 7.309642e+00
---
> mean............ 4.216442e+00
> variance........ 6.401695e+00
296,298c296,298
< mean............ -6.506197e-01
< variance........ 3.837994e-01
< #unique......... 433, #Total UniqueCount: 4419
---
> mean............ -6.506840e-01
> variance........ 3.775357e-01
> #unique......... 419, #Total UniqueCount: 4422
301,302c301,302
< mean............ 3.986862e+00
< variance........ 7.389448e+00
---
> mean............ 3.803004e+00
> variance........ 8.929374e+00
306,308c306,308
< mean............ -6.816249e-01
< variance........ 3.558025e-01
< #unique......... 389, #Total UniqueCount: 4808
---
> mean............ -6.497109e-01
> variance........ 3.885300e-01
> #unique......... 403, #Total UniqueCount: 4825
311,312c311,312
< mean............ 4.314444e+00
< variance........ 5.968875e+00
---
> mean............ 4.103374e+00
> variance........ 7.038492e+00
316,318c316,318
< mean............ -6.609985e-01
< variance........ 3.776215e-01
< #unique......... 405, #Total UniqueCount: 5213
---
> mean............ -7.002825e-01
> variance........ 3.359944e-01
> #unique......... 407, #Total UniqueCount: 5232
321,322c321,322
< mean............ 4.149115e+00
< variance........ 6.419488e+00
---
> mean............ 4.113148e+00
> variance........ 6.708839e+00
326,328c326,328
< mean............ -7.054866e-01
< variance........ 3.220581e-01
< #unique......... 398, #Total UniqueCount: 5611
---
> mean............ -6.969895e-01
> variance........ 3.268609e-01
> #unique......... 398, #Total UniqueCount: 5630
331,332c331,332
< mean............ 4.051897e+00
< variance........ 6.905885e+00
---
> mean............ 4.218568e+00
> variance........ 6.475102e+00
336,338c336,338
< mean............ -6.372628e-01
< variance........ 3.979455e-01
< #unique......... 435, #Total UniqueCount: 6046
---
> mean............ -6.652317e-01
> variance........ 3.542651e-01
> #unique......... 415, #Total UniqueCount: 6045
341,342c341,342
< mean............ 4.074554e+00
< variance........ 6.464851e+00
---
> mean............ 4.084384e+00
> variance........ 7.039829e+00
356c356
< Thu Feb 23 06:42:07 2012
---
> Wed May  4 00:50:46 2011
392c392
< Thu Feb 23 06:42:07 2012
---
> Wed May  4 00:50:46 2011
432c432
< #unique......... 1835, #Total UniqueCount: 4835
---
> #unique......... 1836, #Total UniqueCount: 4836
442c442
< #unique......... 2051, #Total UniqueCount: 6886
---
> #unique......... 2051, #Total UniqueCount: 6887
450,452c450,452
< mean............ 2.892238e-01
< variance........ 2.834886e-02
< #unique......... 1930, #Total UniqueCount: 8816
---
> mean............ 2.864275e-01
> variance........ 2.897977e-02
> #unique......... 2046, #Total UniqueCount: 8933
455,456c455,456
< mean............ 8.976971e-01
< variance........ 6.559784e+00
---
> mean............ 8.399118e-01
> variance........ 6.825600e+00
460,462c460,462
< mean............ 2.830900e-01
< variance........ 2.963827e-02
< #unique......... 1827, #Total UniqueCount: 10643
---
> mean............ 2.838900e-01
> variance........ 2.869139e-02
> #unique......... 1878, #Total UniqueCount: 10811
465,466c465,466
< mean............ 9.209788e-01
< variance........ 7.093196e+00
---
> mean............ 8.908219e-01
> variance........ 6.798754e+00
470,472c470,472
< mean............ 2.927005e-01
< variance........ 2.727738e-02
< #unique......... 1788, #Total UniqueCount: 12431
---
> mean............ 2.901938e-01
> variance........ 2.813199e-02
> #unique......... 1798, #Total UniqueCount: 12609
475,476c475,476
< mean............ 9.232597e-01
< variance........ 5.726659e+00
---
> mean............ 8.704130e-01
> variance........ 6.203916e+00
480,482c480,482
< mean............ 2.954827e-01
< variance........ 2.670420e-02
< #unique......... 1789, #Total UniqueCount: 14220
---
> mean............ 2.921695e-01
> variance........ 2.741696e-02
> #unique......... 1814, #Total UniqueCount: 14423
485,486c485,486
< mean............ 8.399855e-01
< variance........ 5.740500e+00
---
> mean............ 8.472001e-01
> variance........ 5.701943e+00
490,492c490,492
< mean............ 2.944587e-01
< variance........ 2.694436e-02
< #unique......... 1822, #Total UniqueCount: 16042
---
> mean............ 2.880376e-01
> variance........ 2.808988e-02
> #unique......... 1842, #Total UniqueCount: 16265
495,496c495,496
< mean............ 9.021025e-01
< variance........ 5.527700e+00
---
> mean............ 8.380206e-01
> variance........ 6.541224e+00
500,502c500,502
< mean............ 2.892058e-01
< variance........ 2.755928e-02
< #unique......... 1839, #Total UniqueCount: 17881
---
> mean............ 2.860009e-01
> variance........ 2.828495e-02
> #unique......... 1853, #Total UniqueCount: 18118
505,506c505,506
< mean............ 8.488051e-01
< variance........ 6.080532e+00
---
> mean............ 8.542092e-01
> variance........ 6.452253e+00
510,512c510,512
< mean............ 2.916601e-01
< variance........ 2.713029e-02
< #unique......... 1832, #Total UniqueCount: 19713
---
> mean............ 2.942904e-01
> variance........ 2.682284e-02
> #unique......... 1804, #Total UniqueCount: 19922
515,516c515,516
< mean............ 8.706107e-01
< variance........ 5.860679e+00
---
> mean............ 8.537841e-01
> variance........ 5.747967e+00
520,522c520,522
< mean............ 2.898488e-01
< variance........ 2.723394e-02
< #unique......... 1846, #Total UniqueCount: 21559
---
> mean............ 2.903657e-01
> variance........ 2.744221e-02
> #unique......... 1848, #Total UniqueCount: 21770
525,526c525,526
< mean............ 8.599520e-01
< variance........ 5.786851e+00
---
> mean............ 8.261983e-01
> variance........ 6.038556e+00
530,532c530,532
< mean............ 2.983913e-01
< variance........ 2.562110e-02
< #unique......... 1818, #Total UniqueCount: 23377
---
> mean............ 2.983268e-01
> variance........ 2.579515e-02
> #unique......... 1721, #Total UniqueCount: 23491
535,536c535,536
< mean............ 8.155859e-01
< variance........ 5.182398e+00
---
> mean............ 8.328409e-01
> variance........ 5.329774e+00
545c545
<  X[ 1] :	9.995033e-01	G[ 1] :	2.161350e-08
---
>  X[ 1] :	9.995033e-01	G[ 1] :	-1.746217e-09
550,551c550,551
< Thu Feb 23 06:42:10 2012
< Total run time : 0 hours 0 minutes and 3 seconds
---
> Wed May  4 00:50:48 2011
> Total run time : 0 hours 0 minutes and 2 seconds
560c560
< [1] 2.16135e-08
---
> [1] -1.746217e-09
600c600
< Thu Feb 23 06:42:10 2012
---
> Wed May  4 00:50:48 2011
645c645
< #unique......... 3037, #Total UniqueCount: 8037
---
> #unique......... 3044, #Total UniqueCount: 8044
659c659
< #unique......... 3637, #Total UniqueCount: 11674
---
> #unique......... 3637, #Total UniqueCount: 11681
671,673c671,673
< mean............ 9.975146e-01
< variance........ 6.585727e-01
< #unique......... 3537, #Total UniqueCount: 15211
---
> mean............ 9.908482e-01
> variance........ 6.618397e-01
> #unique......... 3424, #Total UniqueCount: 15105
676,677c676,677
< mean............ -9.363936e-01
< variance........ 1.468528e+01
---
> mean............ -8.496201e-01
> variance........ 1.499378e+01
680,681c680,681
< mean............ -8.485870e-01
< variance........ 1.573330e+01
---
> mean............ -9.517423e-01
> variance........ 1.704030e+01
685,687c685,687
< mean............ 9.804646e-01
< variance........ 6.692293e-01
< #unique......... 3377, #Total UniqueCount: 18588
---
> mean............ 9.876343e-01
> variance........ 6.651307e-01
> #unique......... 3644, #Total UniqueCount: 18749
690,691c690,691
< mean............ -8.931520e-01
< variance........ 1.584134e+01
---
> mean............ -9.384029e-01
> variance........ 1.481110e+01
694,695c694,695
< mean............ -8.695397e-01
< variance........ 1.673775e+01
---
> mean............ -9.034500e-01
> variance........ 1.643253e+01
699,701c699,701
< mean............ 1.000466e+00
< variance........ 6.610175e-01
< #unique......... 2788, #Total UniqueCount: 21376
---
> mean............ 9.806229e-01
> variance........ 6.682968e-01
> #unique......... 3362, #Total UniqueCount: 22111
704,705c704,705
< mean............ -9.517187e-01
< variance........ 1.342741e+01
---
> mean............ -8.987182e-01
> variance........ 1.459533e+01
708,709c708,709
< mean............ -9.679348e-01
< variance........ 1.562253e+01
---
> mean............ -8.906048e-01
> variance........ 1.576451e+01
713,715c713,715
< mean............ 9.984302e-01
< variance........ 6.616115e-01
< #unique......... 2602, #Total UniqueCount: 23978
---
> mean............ 9.919701e-01
> variance........ 6.650665e-01
> #unique......... 3036, #Total UniqueCount: 25147
718,719c718,719
< mean............ -9.667758e-01
< variance........ 1.480870e+01
---
> mean............ -8.717355e-01
> variance........ 1.478299e+01
722,723c722,723
< mean............ -8.608610e-01
< variance........ 1.435540e+01
---
> mean............ -9.837840e-01
> variance........ 1.514727e+01
727,729c727,729
< mean............ 9.832149e-01
< variance........ 6.659886e-01
< #unique......... 2676, #Total UniqueCount: 26654
---
> mean............ 9.785551e-01
> variance........ 6.679199e-01
> #unique......... 3077, #Total UniqueCount: 28224
732,733c732,733
< mean............ -8.399847e-01
< variance........ 1.425099e+01
---
> mean............ -9.419792e-01
> variance........ 1.386377e+01
736,737c736,737
< mean............ -9.599173e-01
< variance........ 1.448148e+01
---
> mean............ -1.039813e+00
> variance........ 1.409147e+01
741,743c741,743
< mean............ 1.006897e+00
< variance........ 6.591276e-01
< #unique......... 2583, #Total UniqueCount: 29237
---
> mean............ 9.839740e-01
> variance........ 6.656382e-01
> #unique......... 3060, #Total UniqueCount: 31284
746,747c746,747
< mean............ -8.664300e-01
< variance........ 1.323069e+01
---
> mean............ -8.969875e-01
> variance........ 1.451103e+01
750,751c750,751
< mean............ -9.164463e-01
< variance........ 1.398009e+01
---
> mean............ -9.500069e-01
> variance........ 1.386560e+01
755,757c755,757
< mean............ 1.012706e+00
< variance........ 6.555265e-01
< #unique......... 2520, #Total UniqueCount: 31757
---
> mean............ 9.789811e-01
> variance........ 6.679682e-01
> #unique......... 3061, #Total UniqueCount: 34345
760,761c760,761
< mean............ -9.005868e-01
< variance........ 1.176762e+01
---
> mean............ -9.538414e-01
> variance........ 1.433291e+01
764,765c764,765
< mean............ -9.545787e-01
< variance........ 1.352363e+01
---
> mean............ -9.436746e-01
> variance........ 1.351829e+01
769,771c769,771
< mean............ 1.003790e+00
< variance........ 6.575968e-01
< #unique......... 2608, #Total UniqueCount: 34365
---
> mean............ 9.875318e-01
> variance........ 6.633945e-01
> #unique......... 3040, #Total UniqueCount: 37385
774,775c774,775
< mean............ -8.943001e-01
< variance........ 1.372665e+01
---
> mean............ -9.461229e-01
> variance........ 1.291516e+01
778,779c778,779
< mean............ -9.199017e-01
< variance........ 1.275297e+01
---
> mean............ -8.618071e-01
> variance........ 1.353977e+01
783,785c783,785
< mean............ 9.729715e-01
< variance........ 6.665570e-01
< #unique......... 2753, #Total UniqueCount: 37118
---
> mean............ 1.001984e+00
> variance........ 6.571237e-01
> #unique......... 3017, #Total UniqueCount: 40402
788,789c788,789
< mean............ -9.088842e-01
< variance........ 1.356276e+01
---
> mean............ -8.762315e-01
> variance........ 1.233993e+01
792,793c792,793
< mean............ -8.351150e-01
< variance........ 1.345370e+01
---
> mean............ -9.260666e-01
> variance........ 1.186558e+01
797,799c797,799
< mean............ 9.691748e-01
< variance........ 6.659975e-01
< #unique......... 2640, #Total UniqueCount: 39758
---
> mean............ 9.897763e-01
> variance........ 6.618311e-01
> #unique......... 3042, #Total UniqueCount: 43444
802,803c802,803
< mean............ -9.653398e-01
< variance........ 1.173838e+01
---
> mean............ -9.666213e-01
> variance........ 1.173213e+01
806,807c806,807
< mean............ -9.174944e-01
< variance........ 1.304441e+01
---
> mean............ -9.631840e-01
> variance........ 1.168714e+01
816,817c816,817
<  X[ 1] :	-1.000000e+00	G[ 1] :	4.962760e-08
<  X[ 2] :	-1.000000e+00	G[ 2] :	-4.060125e-08
---
>  X[ 1] :	-1.000000e+00	G[ 1] :	8.647865e-08
>  X[ 2] :	-1.000000e+00	G[ 2] :	-7.059874e-08
822,823c822,823
< Thu Feb 23 06:42:30 2012
< Total run time : 0 hours 0 minutes and 20 seconds
---
> Wed May  4 00:50:56 2011
> Total run time : 0 hours 0 minutes and 8 seconds
832c832
< [1]  4.962760e-08 -4.060125e-08
---
> [1]  8.647865e-08 -7.059874e-08
** running tests for arch 'x64' OK
  Running 'tests.R'
  Comparing 'tests.Rout' to 'tests.Rout.save' ...11c11
< Thu Feb 23 06:42:31 2012
---
> Wed May  4 00:50:43 2011
169,170c169,170
< Thu Feb 23 06:42:33 2012
< Total run time : 0 hours 0 minutes and 2 seconds
---
> Wed May  4 00:50:44 2011
> Total run time : 0 hours 0 minutes and 1 seconds
198c198
< Thu Feb 23 06:42:33 2012
---
> Wed May  4 00:50:44 2011
356c356
< Thu Feb 23 06:42:35 2012
---
> Wed May  4 00:50:46 2011
392c392
< Thu Feb 23 06:42:35 2012
---
> Wed May  4 00:50:46 2011
550,551c550,551
< Thu Feb 23 06:42:38 2012
< Total run time : 0 hours 0 minutes and 3 seconds
---
> Wed May  4 00:50:48 2011
> Total run time : 0 hours 0 minutes and 2 seconds
600c600
< Thu Feb 23 06:42:38 2012
---
> Wed May  4 00:50:48 2011
822,823c822,823
< Thu Feb 23 06:42:51 2012
< Total run time : 0 hours 0 minutes and 13 seconds
---
> Wed May  4 00:50:56 2011
> Total run time : 0 hours 0 minutes and 8 seconds
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... OK
* checking re-building of vignettes ... OK
* checking PDF version of manual ... OK