* using log directory 'd:/Rcompile/CRANpkg/local/2.13/robustbase.Rcheck' * using R version 2.13.2 (2011-09-30) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'robustbase/DESCRIPTION' ... OK * this is package 'robustbase' version '0.8-0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'robustbase' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .vcov.w: no visible binding for global variable 'r' glmrob: no visible global function definition for 'glmrobCubif' glmrobMqle: no visible binding for global variable 'residP' glmrobMqle: no visible binding for global variable 'residPS' glmrobMqle: no visible binding for global variable 'sV' glmrobMqle: no visible binding for global variable 'dmu.deta' lmrob.ggw.ac: no visible binding for global variable 'r' lmrob.ggw.bp: no visible binding for global variable 'r' lmrob.kappa : fun.min: no visible global function definition for 'psi' lmrob.kappa : fun.min: no visible binding for global variable 'r' lmrob.kappa : fun.min: no visible global function definition for 'wgt' lmrob.tau.fast.coefs: no visible binding for global variable 'r' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable compilation flags in Makevars ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking sizes of PDF files under inst/doc ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in tests ... OK * checking tests ... ** running tests for arch 'i386' OK Running 'LTS-specials.R' Running 'MCD-specials.R' Comparing 'MCD-specials.Rout' to 'MCD-specials.Rout.save' ... OK Running 'OGK-ex.R' Comparing 'OGK-ex.Rout' to 'OGK-ex.Rout.save' ... OK Running 'binom-ni-small.R' Comparing 'binom-ni-small.Rout' to 'binom-ni-small.Rout.save' ... OK Running 'binom-no-x.R' Running 'glmrob-1.R' Running 'glmrob-specials.R' Running 'huber-etc.R' Comparing 'huber-etc.Rout' to 'huber-etc.Rout.save' ... OK Running 'lmrob-data.R' Comparing 'lmrob-data.Rout' to 'lmrob-data.Rout.save' ... OK Running 'lmrob-ex12.R' Running 'lmrob-methods.R' Comparing 'lmrob-methods.Rout' to 'lmrob-methods.Rout.save' ... OK Running 'lmrob-psifns.R' Comparing 'lmrob-psifns.Rout' to 'lmrob-psifns.Rout.save' ... OK Running 'mc-etc.R' Comparing 'mc-etc.Rout' to 'mc-etc.Rout.save' ...34c34 < --> mc(rlnorm(4)) = -0.000000 --- > --> mc(rlnorm(4)) = 0.000000 Running 'mc-strict.R' Running 'plot-ex.R' Running 'poisson-ex.R' Running 'psi-rho-etc.R' Comparing 'psi-rho-etc.Rout' to 'psi-rho-etc.Rout.save' ... OK Running 'small-sample.R' Comparing 'small-sample.Rout' to 'small-sample.Rout.save' ... OK Running 'tlts.R' Comparing 'tlts.Rout' to 'tlts.Rout.save' ... OK Running 'tmcd.R' Comparing 'tmcd.Rout' to 'tmcd.Rout.save' ... OK Running 'wgt-himed-xtra.R' Running 'wgt-himed.R' Comparing 'wgt-himed.Rout' to 'wgt-himed.Rout.save' ... OK ** running tests for arch 'x64' OK Running 'LTS-specials.R' Running 'MCD-specials.R' Comparing 'MCD-specials.Rout' to 'MCD-specials.Rout.save' ... OK Running 'OGK-ex.R' Comparing 'OGK-ex.Rout' to 'OGK-ex.Rout.save' ... OK Running 'binom-ni-small.R' Comparing 'binom-ni-small.Rout' to 'binom-ni-small.Rout.save' ... OK Running 'binom-no-x.R' Running 'glmrob-1.R' Running 'glmrob-specials.R' Running 'huber-etc.R' Comparing 'huber-etc.Rout' to 'huber-etc.Rout.save' ... OK Running 'lmrob-data.R' Comparing 'lmrob-data.Rout' to 'lmrob-data.Rout.save' ... OK Running 'lmrob-ex12.R' Running 'lmrob-methods.R' Comparing 'lmrob-methods.Rout' to 'lmrob-methods.Rout.save' ... OK Running 'lmrob-psifns.R' Comparing 'lmrob-psifns.Rout' to 'lmrob-psifns.Rout.save' ... OK Running 'mc-etc.R' Comparing 'mc-etc.Rout' to 'mc-etc.Rout.save' ... OK Running 'mc-strict.R' Running 'plot-ex.R' Running 'poisson-ex.R' Running 'psi-rho-etc.R' Comparing 'psi-rho-etc.Rout' to 'psi-rho-etc.Rout.save' ... OK Running 'small-sample.R' Comparing 'small-sample.Rout' to 'small-sample.Rout.save' ... OK Running 'tlts.R' Comparing 'tlts.Rout' to 'tlts.Rout.save' ... OK Running 'tmcd.R' Comparing 'tmcd.Rout' to 'tmcd.Rout.save' ...887c887 < system is computationally singular: reciprocal condition number = 4.85293e-011 --- > system is computationally singular: reciprocal condition number = 4.85293e-11 Running 'wgt-himed-xtra.R' Running 'wgt-himed.R' Comparing 'wgt-himed.Rout' to 'wgt-himed.Rout.save' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... OK * checking re-building of vignettes ... NOTE Error in re-building vignettes: ... Warning: Removed 75 rows containing missing values (geom_point). Warning: Removed 30 rows containing missing values (geom_point). Warning: Removed 30 rows containing missing values (geom_point). Warning: Removed 45 rows containing missing values (stat_summary). Warning: Removed 75 rows containing missing values (stat_summary). Warning: Removed 30 rows containing missing values (stat_summary). Warning: Removed 30 rows containing missing values (stat_summary). Warning: Removed 45 rows containing missing values (geom_point). Warning: Removed 75 rows containing missing values (geom_point). Warning: Removed 30 rows containing missing values (geom_point). Warning: Removed 30 rows containing missing values (geom_point). Using method.cov, Error, Psi as id variables Using method.cov, Error, Psi as id variables Warning: Removed 1 rows containing missing values (geom_path). Warning: Removed 2 rows containing missing values (geom_path). Warning: Removed 1 rows containing missing values (geom_path). Warning: Removed 2 rows containing missing values (geom_path). make[1]: Entering directory `/cygdrive/d/RCompile/CRANpkg/local/2.13/robustbase.Rcheck/vign_test/robustbase/inst/doc' texi2pdf lmrob_simulation.tex make[1]: texi2pdf: Command not found make[1]: *** [lmrob_simulation.pdf] Error 127 make[1]: Leaving directory `/cygdrive/d/RCompile/CRANpkg/local/2.13/robustbase.Rcheck/vign_test/robustbase/inst/doc' Error in buildVignettes(dir = "d:/Rcompile/CRANpkg/local/2.13/robustbase.Rcheck/vign_test/robustbase") : running 'make' failed Execution halted * checking PDF version of manual ... OK