* using log directory 'd:/Rcompile/CRANpkg/local/2.13/soilDB.Rcheck' * using R version 2.13.2 (2011-09-30) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'soilDB/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'soilDB' version '0.3-3' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'soilDB' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE fetchPedonPC: no visible binding for global variable 'pedon_id' getHzErrorsPedonPC: no visible binding for global variable 'pedon_id' * checking Rd files ... NOTE prepare_Rd: fetchPedonPC.Rd:13: Dropping empty section \references prepare_Rd: fetchPedonPC.Rd:18: Dropping empty section \examples prepare_Rd: get_colors_from_NASIS_db.Rd:17: Dropping empty section \note prepare_Rd: get_colors_from_NASIS_db.Rd:15: Dropping empty section \references prepare_Rd: get_colors_from_NASIS_db.Rd:24-25: Dropping empty section \examples prepare_Rd: get_colors_from_pedon_db.Rd:18: Dropping empty section \note prepare_Rd: get_colors_from_pedon_db.Rd:16: Dropping empty section \references prepare_Rd: get_colors_from_pedon_db.Rd:25-26: Dropping empty section \examples prepare_Rd: get_extended_data_from_NASIS_db.Rd:17: Dropping empty section \note prepare_Rd: get_extended_data_from_NASIS_db.Rd:15: Dropping empty section \references prepare_Rd: get_extended_data_from_NASIS_db.Rd:24-25: Dropping empty section \examples prepare_Rd: get_extended_data_from_pedon_db.Rd:17: Dropping empty section \note prepare_Rd: get_extended_data_from_pedon_db.Rd:15: Dropping empty section \references prepare_Rd: get_extended_data_from_pedon_db.Rd:24-25: Dropping empty section \examples prepare_Rd: get_hz_data_from_NASIS_db.Rd:15: Dropping empty section \references prepare_Rd: get_hz_data_from_NASIS_db.Rd:24-26: Dropping empty section \examples prepare_Rd: get_hz_data_from_pedon_db.Rd:15: Dropping empty section \references prepare_Rd: get_hz_data_from_pedon_db.Rd:24-26: Dropping empty section \examples prepare_Rd: get_site_data_from_NASIS_db.Rd:13: Dropping empty section \details prepare_Rd: get_site_data_from_NASIS_db.Rd:15-17: Dropping empty section \references prepare_Rd: get_site_data_from_NASIS_db.Rd:26-27: Dropping empty section \examples prepare_Rd: get_site_data_from_pedon_db.Rd:13: Dropping empty section \details prepare_Rd: get_site_data_from_pedon_db.Rd:15-17: Dropping empty section \references prepare_Rd: get_site_data_from_pedon_db.Rd:26-27: Dropping empty section \examples prepare_Rd: get_veg_from_AK_Site.Rd:13: Dropping empty section \details prepare_Rd: get_veg_from_AK_Site.Rd:15: Dropping empty section \references prepare_Rd: get_veg_from_AK_Site.Rd:24-25: Dropping empty section \examples prepare_Rd: get_veg_from_MT_veg_db.Rd:17: Dropping empty section \note prepare_Rd: get_veg_from_MT_veg_db.Rd:15: Dropping empty section \references prepare_Rd: get_veg_from_MT_veg_db.Rd:24-26: Dropping empty section \examples prepare_Rd: get_veg_other_from_MT_veg_db.Rd:17: Dropping empty section \note prepare_Rd: get_veg_other_from_MT_veg_db.Rd:15: Dropping empty section \references prepare_Rd: get_veg_other_from_MT_veg_db.Rd:24-26: Dropping empty section \examples prepare_Rd: get_veg_species_from_MT_veg_db.Rd:17: Dropping empty section \note prepare_Rd: get_veg_species_from_MT_veg_db.Rd:15: Dropping empty section \references prepare_Rd: get_veg_species_from_MT_veg_db.Rd:24-26: Dropping empty section \examples prepare_Rd: mapunit_geom_by_ll_bbox.Rd:17: Dropping empty section \seealso prepare_Rd: soilDB-package.Rd:9: Dropping empty section \references * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK * checking PDF version of manual ... OK