* using log directory 'd:/Rcompile/CRANpkg/local/2.13/supclust.Rcheck' * using R version 2.13.2 (2011-09-30) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'supclust/DESCRIPTION' ... OK * this is package 'supclust' version '1.0-7' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'supclust' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable compilation flags in Makevars ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in tests ... OK * checking tests ... ** running tests for arch 'i386' OK Running 'pelora-ex.R' Comparing 'pelora-ex.Rout' to 'pelora-ex.Rout.save' ...100,114c100,114 < Entry 1 : Gene 69 (flipped) < Entry 2 : Gene 225 (flipped) < Entry 3 : Gene 126 < Entry 4 : Gene 100 (flipped) < Entry 5 : Gene 204 (flipped) < Entry 6 : Gene 20 (flipped) < Entry 7 : Gene 215 (flipped) < Entry 8 : Gene 228 (flipped) < Entry 9 : Gene 105 (flipped) < Entry 10 : Gene 186 < Entry 11 : Gene 173 (flipped) < Entry 12 : Gene 218 (flipped) < Entry 13 : Gene 222 < Entry 14 : Gene 123 (flipped) < Entry 15 : Gene 58 (flipped) --- > Entry 1 : Gene 69 > Entry 2 : Gene 225 > Entry 3 : Gene 126 (flipped) > Entry 4 : Gene 100 > Entry 5 : Gene 204 > Entry 6 : Gene 20 > Entry 7 : Gene 215 > Entry 8 : Gene 228 > Entry 9 : Gene 105 > Entry 10 : Gene 186 (flipped) > Entry 11 : Gene 173 > Entry 12 : Gene 218 > Entry 13 : Gene 222 (flipped) > Entry 14 : Gene 123 > Entry 15 : Gene 58 135c135 < -0.04619694 4.04250968 -4.92367256 4.75737556 --- > -0.04619694 4.04250968 4.92367256 4.75737556 139,176c139,176 < 1 -0.2285066 0.12432003 -0.33983410 < 2 -0.2017373 0.04138686 -0.38015308 < 3 -0.2615608 0.04055937 -0.39419765 < 4 -0.2780412 0.09475581 -0.34197622 < 5 -0.2723402 0.09896039 -0.36545322 < 6 -0.2570126 0.10788684 -0.30544423 < 7 -0.2582871 0.06090086 -0.29378052 < 8 -0.2432369 0.01509041 -0.38560155 < 9 -0.2800386 0.05157562 -0.34834236 < 10 -0.2349189 0.05628643 -0.30459387 < 11 -0.3159678 0.10866037 -0.33425831 < 12 -0.3399309 0.01791853 -0.39402569 < 13 -0.3098570 0.06796453 -0.35068307 < 14 -0.2911981 -0.01395371 -0.36716178 < 15 -0.2804411 0.11240865 -0.35376125 < 16 -0.2989401 0.04680822 -0.34514395 < 17 -0.3064803 0.03457211 -0.29166647 < 18 -0.3009477 0.04104916 -0.36065756 < 19 -0.2803658 0.01647425 -0.34734494 < 20 -0.3619075 0.02772715 -0.36860677 < 21 -0.2534279 0.06582762 -0.32617354 < 22 -0.2767475 0.05673009 -0.33408313 < 23 -0.2594244 0.06804213 -0.33286369 < 24 -0.2686963 0.05743951 -0.37159634 < 25 -0.2493578 0.07558631 -0.33871439 < 26 -0.3445316 0.05378141 -0.37364051 < 27 -0.2656955 0.09953485 -0.35245539 < 28 0.1830933 -0.33047470 0.02750604 < 29 0.2351452 -0.33496886 0.08166425 < 30 0.1945311 -0.39994464 0.07867998 < 31 0.2281800 -0.35522562 0.04344020 < 32 0.2371330 -0.36371202 0.10003395 < 33 0.2427357 -0.31841017 0.07078407 < 34 0.2418461 -0.35177789 0.05783627 < 35 0.1971921 -0.33679719 0.04908993 < 36 0.2026620 -0.34749665 0.08493945 < 37 0.2051926 -0.31614019 0.12107278 < 38 0.2108391 -0.32627858 0.07758265 --- > 1 -0.2285066 -0.12432003 -0.33983410 > 2 -0.2017373 -0.04138686 -0.38015308 > 3 -0.2615608 -0.04055937 -0.39419765 > 4 -0.2780412 -0.09475581 -0.34197622 > 5 -0.2723402 -0.09896039 -0.36545322 > 6 -0.2570126 -0.10788684 -0.30544423 > 7 -0.2582871 -0.06090086 -0.29378052 > 8 -0.2432369 -0.01509041 -0.38560155 > 9 -0.2800386 -0.05157562 -0.34834236 > 10 -0.2349189 -0.05628643 -0.30459387 > 11 -0.3159678 -0.10866037 -0.33425831 > 12 -0.3399309 -0.01791853 -0.39402569 > 13 -0.3098570 -0.06796453 -0.35068307 > 14 -0.2911981 0.01395371 -0.36716178 > 15 -0.2804411 -0.11240865 -0.35376125 > 16 -0.2989401 -0.04680822 -0.34514395 > 17 -0.3064803 -0.03457211 -0.29166647 > 18 -0.3009477 -0.04104916 -0.36065756 > 19 -0.2803658 -0.01647425 -0.34734494 > 20 -0.3619075 -0.02772715 -0.36860677 > 21 -0.2534279 -0.06582762 -0.32617354 > 22 -0.2767475 -0.05673009 -0.33408313 > 23 -0.2594244 -0.06804213 -0.33286369 > 24 -0.2686963 -0.05743951 -0.37159634 > 25 -0.2493578 -0.07558631 -0.33871439 > 26 -0.3445316 -0.05378141 -0.37364051 > 27 -0.2656955 -0.09953485 -0.35245539 > 28 0.1830933 0.33047470 0.02750604 > 29 0.2351452 0.33496886 0.08166425 > 30 0.1945311 0.39994464 0.07867998 > 31 0.2281800 0.35522562 0.04344020 > 32 0.2371330 0.36371202 0.10003395 > 33 0.2427357 0.31841017 0.07078407 > 34 0.2418461 0.35177789 0.05783627 > 35 0.1971921 0.33679719 0.04908993 > 36 0.2026620 0.34749665 0.08493945 > 37 0.2051926 0.31614019 0.12107278 > 38 0.2108391 0.32627858 0.07758265 263,265c263,265 < 1 0.1799321 0.19641747 0.4566692 < 2 0.3055774 0.04751572 -0.0557937 < 3 -0.1820159 0.25441379 -0.0938568 --- > 1 0.1799321 -0.19641747 0.4566692 > 2 0.3055774 -0.04751572 -0.0557937 > 3 -0.1820159 -0.25441379 -0.0938568 296,311c296,311 < Entry 1 : Gene 74 (flipped) < Entry 2 : Gene 61 < Entry 3 : Gene 26 < Entry 4 : Gene 83 (flipped) < Entry 5 : Gene 21 (flipped) < Entry 6 : Gene 76 < Entry 7 : Gene 128 (flipped) < Entry 8 : Gene 86 < Entry 9 : Gene 5 (flipped) < Entry 10 : Gene 118 (flipped) < Entry 11 : Gene 19 (flipped) < Entry 12 : Gene 42 (flipped) < Entry 13 : Gene 85 (flipped) < Entry 14 : Gene 143 < Entry 15 : Gene 145 (flipped) < Entry 16 : Gene 37 (flipped) --- > Entry 1 : Gene 74 > Entry 2 : Gene 61 (flipped) > Entry 3 : Gene 26 (flipped) > Entry 4 : Gene 83 > Entry 5 : Gene 21 > Entry 6 : Gene 76 (flipped) > Entry 7 : Gene 128 > Entry 8 : Gene 86 (flipped) > Entry 9 : Gene 5 > Entry 10 : Gene 118 > Entry 11 : Gene 19 > Entry 12 : Gene 42 > Entry 13 : Gene 85 > Entry 14 : Gene 143 (flipped) > Entry 15 : Gene 145 > Entry 16 : Gene 37 314,328c314,328 < Entry 1 : Gene 74 (flipped) < Entry 2 : Gene 87 < Entry 3 : Gene 26 < Entry 4 : Gene 83 (flipped) < Entry 5 : Gene 91 (flipped) < Entry 6 : Gene 41 < Entry 7 : Gene 143 < Entry 8 : Gene 36 (flipped) < Entry 9 : Gene 14 (flipped) < Entry 10 : Gene 28 (flipped) < Entry 11 : Gene 86 < Entry 12 : Gene 140 (flipped) < Entry 13 : Gene 73 (flipped) < Entry 14 : Gene 23 (flipped) < Entry 15 : Gene 2 --- > Entry 1 : Gene 74 > Entry 2 : Gene 87 (flipped) > Entry 3 : Gene 26 (flipped) > Entry 4 : Gene 83 > Entry 5 : Gene 91 > Entry 6 : Gene 41 (flipped) > Entry 7 : Gene 143 (flipped) > Entry 8 : Gene 36 > Entry 9 : Gene 14 > Entry 10 : Gene 28 > Entry 11 : Gene 86 (flipped) > Entry 12 : Gene 140 > Entry 13 : Gene 73 > Entry 14 : Gene 23 > Entry 15 : Gene 2 (flipped) 333c333 < -3.0532627 0.5126493 -5.4154448 -6.1338757 --- > -3.0532627 0.5126493 5.4154448 6.1338757 337,374c337,374 < 1 -0.4060399 -0.07464815 0.028169187 < 2 0.9430274 -0.06085408 0.072092784 < 3 -0.6145205 -0.07113486 0.025958022 < 4 -1.3627031 -0.20419474 0.035688525 < 5 -1.3734152 -0.16308366 0.049328858 < 6 1.0657803 0.03035889 0.061855154 < 7 -1.3374205 -0.15435873 0.011033113 < 8 -1.3354139 -0.15541127 -0.006084757 < 9 -0.4067449 -0.07274069 0.036365641 < 10 0.2760965 -0.10639400 0.091084023 < 11 -1.2437437 -0.03430185 0.003883833 < 12 -0.9485866 -0.08602487 0.008267847 < 13 -1.3183164 -0.10202449 0.100689913 < 14 0.5652176 -0.05799033 0.060489791 < 15 -1.3396861 -0.11591672 0.034943447 < 16 -1.3573863 -0.12957623 -0.003937245 < 17 -0.4053540 -0.10862732 0.021728478 < 18 -1.1799757 -0.09815511 0.008287326 < 19 -1.2076066 -0.13663833 0.032452774 < 20 -0.9575222 -0.07371898 0.062767649 < 21 -1.0457692 -0.10205298 0.001820048 < 22 -1.1115955 -0.14417662 0.054465167 < 23 0.1934126 -0.14646046 0.048362945 < 24 -1.4346453 -0.11915112 -0.022833576 < 25 -1.2171742 -0.13518107 0.019291338 < 26 -1.2463141 -0.10646528 0.054424278 < 27 -1.2163623 -0.07119922 0.030853434 < 28 0.7410577 -0.59063592 -0.316590057 < 29 2.8713446 -0.44314986 -0.339721985 < 30 2.8404211 -0.45458805 -0.289022619 < 31 2.5610426 -0.50255329 -0.355455040 < 32 2.8598801 -0.48030548 -0.337470075 < 33 1.6246713 -0.52645403 -0.364288105 < 34 1.1566060 -0.57145319 -0.326016744 < 35 1.3758300 -0.55623830 -0.314298968 < 36 2.8477323 -0.48881856 -0.349464891 < 37 2.8649981 -0.39457683 -0.321771792 < 38 1.2206500 -0.54763894 -0.342840734 --- > 1 -0.4060399 0.07464815 -0.028169187 > 2 0.9430274 0.06085408 -0.072092784 > 3 -0.6145205 0.07113486 -0.025958022 > 4 -1.3627031 0.20419474 -0.035688525 > 5 -1.3734152 0.16308366 -0.049328858 > 6 1.0657803 -0.03035889 -0.061855154 > 7 -1.3374205 0.15435873 -0.011033113 > 8 -1.3354139 0.15541127 0.006084757 > 9 -0.4067449 0.07274069 -0.036365641 > 10 0.2760965 0.10639400 -0.091084023 > 11 -1.2437437 0.03430185 -0.003883833 > 12 -0.9485866 0.08602487 -0.008267847 > 13 -1.3183164 0.10202449 -0.100689913 > 14 0.5652176 0.05799033 -0.060489791 > 15 -1.3396861 0.11591672 -0.034943447 > 16 -1.3573863 0.12957623 0.003937245 > 17 -0.4053540 0.10862732 -0.021728478 > 18 -1.1799757 0.09815511 -0.008287326 > 19 -1.2076066 0.13663833 -0.032452774 > 20 -0.9575222 0.07371898 -0.062767649 > 21 -1.0457692 0.10205298 -0.001820048 > 22 -1.1115955 0.14417662 -0.054465167 > 23 0.1934126 0.14646046 -0.048362945 > 24 -1.4346453 0.11915112 0.022833576 > 25 -1.2171742 0.13518107 -0.019291338 > 26 -1.2463141 0.10646528 -0.054424278 > 27 -1.2163623 0.07119922 -0.030853434 > 28 0.7410577 0.59063592 0.316590057 > 29 2.8713446 0.44314986 0.339721985 > 30 2.8404211 0.45458805 0.289022619 > 31 2.5610426 0.50255329 0.355455040 > 32 2.8598801 0.48030548 0.337470075 > 33 1.6246713 0.52645403 0.364288105 > 34 1.1566060 0.57145319 0.326016744 > 35 1.3758300 0.55623830 0.314298968 > 36 2.8477323 0.48881856 0.349464891 > 37 2.8649981 0.39457683 0.321771792 > 38 1.2206500 0.54763894 0.342840734 461,463c461,463 < 1 0.4595198 0.3708049 0.2264831 < 2 0.3588264 0.0067910 -0.1107539 < 3 -1.4099869 0.1514969 0.6695877 --- > 1 0.4595198 -0.3708049 -0.2264831 > 2 0.3588264 -0.0067910 0.1107539 > 3 -1.4099869 -0.1514969 -0.6695877 507,521c507,521 < Entry 1 : Gene 69 (flipped) : Name V69 < Entry 2 : Gene 225 (flipped) : Name V225 < Entry 3 : Gene 126 : Name V126 < Entry 4 : Gene 100 (flipped) : Name V100 < Entry 5 : Gene 204 (flipped) : Name V204 < Entry 6 : Gene 20 (flipped) : Name V20 < Entry 7 : Gene 215 (flipped) : Name V215 < Entry 8 : Gene 228 (flipped) : Name V228 < Entry 9 : Gene 105 (flipped) : Name V105 < Entry 10 : Gene 186 : Name V186 < Entry 11 : Gene 173 (flipped) : Name V173 < Entry 12 : Gene 218 (flipped) : Name V218 < Entry 13 : Gene 222 : Name V222 < Entry 14 : Gene 123 (flipped) : Name V123 < Entry 15 : Gene 58 (flipped) : Name V58 --- > Entry 1 : Gene 69 : Name V69 > Entry 2 : Gene 225 : Name V225 > Entry 3 : Gene 126 (flipped) : Name V126 > Entry 4 : Gene 100 : Name V100 > Entry 5 : Gene 204 : Name V204 > Entry 6 : Gene 20 : Name V20 > Entry 7 : Gene 215 : Name V215 > Entry 8 : Gene 228 : Name V228 > Entry 9 : Gene 105 : Name V105 > Entry 10 : Gene 186 (flipped) : Name V186 > Entry 11 : Gene 173 : Name V173 > Entry 12 : Gene 218 : Name V218 > Entry 13 : Gene 222 (flipped) : Name V222 > Entry 14 : Gene 123 : Name V123 > Entry 15 : Gene 58 : Name V58 542c542 < -0.04619694 4.04250968 -4.92367256 4.75737556 --- > -0.04619694 4.04250968 4.92367256 4.75737556 546,583c546,583 < 1 -0.2285066 0.12432003 -0.33983410 < 2 -0.2017373 0.04138686 -0.38015308 < 3 -0.2615608 0.04055937 -0.39419765 < 4 -0.2780412 0.09475581 -0.34197622 < 5 -0.2723402 0.09896039 -0.36545322 < 6 -0.2570126 0.10788684 -0.30544423 < 7 -0.2582871 0.06090086 -0.29378052 < 8 -0.2432369 0.01509041 -0.38560155 < 9 -0.2800386 0.05157562 -0.34834236 < 10 -0.2349189 0.05628643 -0.30459387 < 11 -0.3159678 0.10866037 -0.33425831 < 12 -0.3399309 0.01791853 -0.39402569 < 13 -0.3098570 0.06796453 -0.35068307 < 14 -0.2911981 -0.01395371 -0.36716178 < 15 -0.2804411 0.11240865 -0.35376125 < 16 -0.2989401 0.04680822 -0.34514395 < 17 -0.3064803 0.03457211 -0.29166647 < 18 -0.3009477 0.04104916 -0.36065756 < 19 -0.2803658 0.01647425 -0.34734494 < 20 -0.3619075 0.02772715 -0.36860677 < 21 -0.2534279 0.06582762 -0.32617354 < 22 -0.2767475 0.05673009 -0.33408313 < 23 -0.2594244 0.06804213 -0.33286369 < 24 -0.2686963 0.05743951 -0.37159634 < 25 -0.2493578 0.07558631 -0.33871439 < 26 -0.3445316 0.05378141 -0.37364051 < 27 -0.2656955 0.09953485 -0.35245539 < 28 0.1830933 -0.33047470 0.02750604 < 29 0.2351452 -0.33496886 0.08166425 < 30 0.1945311 -0.39994464 0.07867998 < 31 0.2281800 -0.35522562 0.04344020 < 32 0.2371330 -0.36371202 0.10003395 < 33 0.2427357 -0.31841017 0.07078407 < 34 0.2418461 -0.35177789 0.05783627 < 35 0.1971921 -0.33679719 0.04908993 < 36 0.2026620 -0.34749665 0.08493945 < 37 0.2051926 -0.31614019 0.12107278 < 38 0.2108391 -0.32627858 0.07758265 --- > 1 -0.2285066 -0.12432003 -0.33983410 > 2 -0.2017373 -0.04138686 -0.38015308 > 3 -0.2615608 -0.04055937 -0.39419765 > 4 -0.2780412 -0.09475581 -0.34197622 > 5 -0.2723402 -0.09896039 -0.36545322 > 6 -0.2570126 -0.10788684 -0.30544423 > 7 -0.2582871 -0.06090086 -0.29378052 > 8 -0.2432369 -0.01509041 -0.38560155 > 9 -0.2800386 -0.05157562 -0.34834236 > 10 -0.2349189 -0.05628643 -0.30459387 > 11 -0.3159678 -0.10866037 -0.33425831 > 12 -0.3399309 -0.01791853 -0.39402569 > 13 -0.3098570 -0.06796453 -0.35068307 > 14 -0.2911981 0.01395371 -0.36716178 > 15 -0.2804411 -0.11240865 -0.35376125 > 16 -0.2989401 -0.04680822 -0.34514395 > 17 -0.3064803 -0.03457211 -0.29166647 > 18 -0.3009477 -0.04104916 -0.36065756 > 19 -0.2803658 -0.01647425 -0.34734494 > 20 -0.3619075 -0.02772715 -0.36860677 > 21 -0.2534279 -0.06582762 -0.32617354 > 22 -0.2767475 -0.05673009 -0.33408313 > 23 -0.2594244 -0.06804213 -0.33286369 > 24 -0.2686963 -0.05743951 -0.37159634 > 25 -0.2493578 -0.07558631 -0.33871439 > 26 -0.3445316 -0.05378141 -0.37364051 > 27 -0.2656955 -0.09953485 -0.35245539 > 28 0.1830933 0.33047470 0.02750604 > 29 0.2351452 0.33496886 0.08166425 > 30 0.1945311 0.39994464 0.07867998 > 31 0.2281800 0.35522562 0.04344020 > 32 0.2371330 0.36371202 0.10003395 > 33 0.2427357 0.31841017 0.07078407 > 34 0.2418461 0.35177789 0.05783627 > 35 0.1971921 0.33679719 0.04908993 > 36 0.2026620 0.34749665 0.08493945 > 37 0.2051926 0.31614019 0.12107278 > 38 0.2108391 0.32627858 0.07758265 670,672c670,672 < 1 0.1799321 0.19641747 0.4566692 < 2 0.3055774 0.04751572 -0.0557937 < 3 -0.1820159 0.25441379 -0.0938568 --- > 1 0.1799321 -0.19641747 0.4566692 > 2 0.3055774 -0.04751572 -0.0557937 > 3 -0.1820159 -0.25441379 -0.0938568 Running 'wilma-ex.R' Comparing 'wilma-ex.Rout' to 'wilma-ex.Rout.save' ...1a2,17 > R Under development (unstable) (2011-11-30 r57772) > Copyright (C) 2011 The R Foundation for Statistical Computing > ISBN 3-900051-07-0 > Platform: x86_64-unknown-linux-gnu (64-bit) > > R is free software and comes with ABSOLUTELY NO WARRANTY. > You are welcome to redistribute it under certain conditions. > Type 'license()' or 'licence()' for distribution details. > > R is a collaborative project with many contributors. > Type 'contributors()' for more information and > 'citation()' on how to cite R or R packages in publications. > > Type 'demo()' for some demos, 'help()' for on-line help, or > 'help.start()' for an HTML browser interface to help. > Type 'q()' to quit R. ** running tests for arch 'x64' OK Running 'pelora-ex.R' Comparing 'pelora-ex.Rout' to 'pelora-ex.Rout.save' ... OK Running 'wilma-ex.R' Comparing 'wilma-ex.Rout' to 'wilma-ex.Rout.save' ...1a2,17 > R Under development (unstable) (2011-11-30 r57772) > Copyright (C) 2011 The R Foundation for Statistical Computing > ISBN 3-900051-07-0 > Platform: x86_64-unknown-linux-gnu (64-bit) > > R is free software and comes with ABSOLUTELY NO WARRANTY. > You are welcome to redistribute it under certain conditions. > Type 'license()' or 'licence()' for distribution details. > > R is a collaborative project with many contributors. > Type 'contributors()' for more information and > 'citation()' on how to cite R or R packages in publications. > > Type 'demo()' for some demos, 'help()' for on-line help, or > 'help.start()' for an HTML browser interface to help. > Type 'q()' to quit R. * checking PDF version of manual ... OK