* using log directory 'd:/Rcompile/CRANpkg/local/2.13/tsDyn.Rcheck' * using R version 2.13.2 (2011-09-30) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'tsDyn/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'tsDyn' version '0.8-1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'tsDyn' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking sizes of PDF files under inst/doc ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in tests ... OK * checking tests ... ** running tests for arch 'i386' OK Running '00SetarAndFriends.R' Comparing '00SetarAndFriends.Rout' to '00SetarAndFriends.Rout.save' ...1a2,19 > R Under development (unstable) (2012-02-01 r58249) > Copyright (C) 2012 The R Foundation for Statistical Computing > ISBN 3-900051-07-0 > Platform: x86_64-unknown-linux-gnu (64-bit) > > R is free software and comes with ABSOLUTELY NO WARRANTY. > You are welcome to redistribute it under certain conditions. > Type 'license()' or 'licence()' for distribution details. > > Natural language support but running in an English locale > > R is a collaborative project with many contributors. > Type 'contributors()' for more information and > 'citation()' on how to cite R or R packages in publications. > > Type 'demo()' for some demos, 'help()' for on-line help, or > 'help.start()' for an HTML browser interface to help. > Type 'q()' to quit R. 4c22 < This is mgcv 1.7-11. For overview type 'help("mgcv-package")'. --- > This is mgcv 1.7-13. For overview type 'help("mgcv-package")'. Running 'TVECM_HSTEST.R' Comparing 'TVECM_HSTEST.Rout' to 'TVECM_HSTEST.Rout.save' ...1a2,19 > R Under development (unstable) (2012-02-01 r58249) > Copyright (C) 2012 The R Foundation for Statistical Computing > ISBN 3-900051-07-0 > Platform: x86_64-unknown-linux-gnu (64-bit) > > R is free software and comes with ABSOLUTELY NO WARRANTY. > You are welcome to redistribute it under certain conditions. > Type 'license()' or 'licence()' for distribution details. > > Natural language support but running in an English locale > > R is a collaborative project with many contributors. > Type 'contributors()' for more information and > 'citation()' on how to cite R or R packages in publications. > > Type 'demo()' for some demos, 'help()' for on-line help, or > 'help.start()' for an HTML browser interface to help. > Type 'q()' to quit R. 4c22 < This is mgcv 1.7-11. For overview type 'help("mgcv-package")'. --- > This is mgcv 1.7-13. For overview type 'help("mgcv-package")'. Running 'VECM.R' Comparing 'VECM.Rout' to 'VECM.Rout.save' ...1a2,19 > R Under development (unstable) (2012-02-01 r58249) > Copyright (C) 2012 The R Foundation for Statistical Computing > ISBN 3-900051-07-0 > Platform: x86_64-unknown-linux-gnu (64-bit) > > R is free software and comes with ABSOLUTELY NO WARRANTY. > You are welcome to redistribute it under certain conditions. > Type 'license()' or 'licence()' for distribution details. > > Natural language support but running in an English locale > > R is a collaborative project with many contributors. > Type 'contributors()' for more information and > 'citation()' on how to cite R or R packages in publications. > > Type 'demo()' for some demos, 'help()' for on-line help, or > 'help.start()' for an HTML browser interface to help. > Type 'q()' to quit R. 4c22 < This is mgcv 1.7-11. For overview type 'help("mgcv-package")'. --- > This is mgcv 1.7-13. For overview type 'help("mgcv-package")'. Running 'lstar.R' Comparing 'lstar.Rout' to 'lstar.Rout.save' ...1a2,19 > R Under development (unstable) (2012-02-01 r58249) > Copyright (C) 2012 The R Foundation for Statistical Computing > ISBN 3-900051-07-0 > Platform: x86_64-unknown-linux-gnu (64-bit) > > R is free software and comes with ABSOLUTELY NO WARRANTY. > You are welcome to redistribute it under certain conditions. > Type 'license()' or 'licence()' for distribution details. > > Natural language support but running in an English locale > > R is a collaborative project with many contributors. > Type 'contributors()' for more information and > 'citation()' on how to cite R or R packages in publications. > > Type 'demo()' for some demos, 'help()' for on-line help, or > 'help.start()' for an HTML browser interface to help. > Type 'q()' to quit R. 4c22 < This is mgcv 1.7-11. For overview type 'help("mgcv-package")'. --- > This is mgcv 1.7-13. For overview type 'help("mgcv-package")'. 70c88 < const1 0.489101 0.204915 2.3869 0.0169933 * --- > const1 0.489101 0.204915 2.3869 0.0169934 * 73c91 < const2 -1.024076 2.430087 -0.4214 0.6734519 --- > const2 -1.024076 2.430088 -0.4214 0.6734520 75,76c93,94 < phi2.2 -0.254609 0.585420 -0.4349 0.6636231 < gamma 11.153834 10.004767 1.1149 0.2649139 --- > phi2.2 -0.254609 0.585420 -0.4349 0.6636233 > gamma 11.153834 10.004778 1.1149 0.2649144 154,157c172,175 < const2 -0.672632 1.336386 -0.5033 0.6147 < phi2.1 0.133118 0.384833 0.3459 0.7294 < gamma 100.003138 93.735767 1.0669 0.2860 < th 3.235707 0.021025 153.8985 <2e-16 *** --- > const2 -0.672632 1.336385 -0.5033 0.6147 > phi2.1 0.133118 0.384832 0.3459 0.7294 > gamma 100.003138 93.734135 1.0669 0.2860 > th 3.235707 0.021025 153.8986 <2e-16 *** 259c277 < Optimized values fixed for regime 2 : gamma = 2.57517 , th = 2.697943 ; SSE = 4.880102 --- > Optimized values fixed for regime 2 : gamma = 2.575169 , th = 2.697943 ; SSE = 4.880102 271c289 < 1.823781e-05 1.403688e+00 -2.333263e-01 --- > 1.823775e-05 1.403688e+00 -2.333263e-01 275c293 < 0.0006929444 0.7390088860 -1.0305204593 --- > 0.0006929443 0.7390088860 -1.0305204594 291c309 < 1.823781e-05 1.403688e+00 -2.333263e-01 --- > 1.823775e-05 1.403688e+00 -2.333263e-01 295c313 < 0.0006929444 0.7390088860 -1.0305204593 --- > 0.0006929443 0.7390088860 -1.0305204594 316c334 < trend2 6.9294e-04 2.3868e-03 0.2903 0.771564 --- > trend2 6.9294e-04 2.3868e-03 0.2903 0.771565 397c415 < trend1 2.5958e-04 1.3092e-03 0.1983 0.8428239 --- > trend1 2.5958e-04 1.3092e-03 0.1983 0.8428240 404,405c422,423 < gamma 1.0000e+02 8.0618e+01 1.2404 0.2148215 < th 2.5681e+00 1.4783e-02 173.7192 < 2.2e-16 *** --- > gamma 1.0000e+02 8.0620e+01 1.2404 0.2148297 > th 2.5681e+00 1.4783e-02 173.7191 < 2.2e-16 *** 479c497 < const1 0.399240 0.283209 1.4097 0.1586271 --- > const1 0.399240 0.283183 1.4098 0.1585895 481,486c499,504 < phi1.2 -0.331696 0.097444 -3.4039 0.0006642 *** < const2 0.782130 0.346224 2.2590 0.0238814 * < phi2.1 0.300946 0.165911 1.8139 0.0696925 . < phi2.2 -0.624613 0.118992 -5.2492 1.528e-07 *** < gamma 871.923077 3743.942018 0.2329 0.8158476 < th 2.560332 0.010128 252.7953 < 2.2e-16 *** --- > phi1.2 -0.331696 0.097428 -3.4045 0.0006628 *** > const2 0.782130 0.346191 2.2592 0.0238681 * > phi2.1 0.300946 0.165911 1.8139 0.0696923 . > phi2.2 -0.624613 0.118978 -5.2498 1.523e-07 *** > gamma 871.923077 3673.244447 0.2374 0.8123687 > th 2.560332 0.010033 255.1885 < 2.2e-16 *** Running 'regime.R' Running 'toMlm.R' Comparing 'toMlm.Rout' to 'toMlm.Rout.save' ...1a2,19 > R Under development (unstable) (2012-02-01 r58249) > Copyright (C) 2012 The R Foundation for Statistical Computing > ISBN 3-900051-07-0 > Platform: x86_64-unknown-linux-gnu (64-bit) > > R is free software and comes with ABSOLUTELY NO WARRANTY. > You are welcome to redistribute it under certain conditions. > Type 'license()' or 'licence()' for distribution details. > > Natural language support but running in an English locale > > R is a collaborative project with many contributors. > Type 'contributors()' for more information and > 'citation()' on how to cite R or R packages in publications. > > Type 'demo()' for some demos, 'help()' for on-line help, or > 'help.start()' for an HTML browser interface to help. > Type 'q()' to quit R. 4c22 < This is mgcv 1.7-11. For overview type 'help("mgcv-package")'. --- > This is mgcv 1.7-13. For overview type 'help("mgcv-package")'. ** running tests for arch 'x64' OK Running '00SetarAndFriends.R' Comparing '00SetarAndFriends.Rout' to '00SetarAndFriends.Rout.save' ...1a2,19 > R Under development (unstable) (2012-02-01 r58249) > Copyright (C) 2012 The R Foundation for Statistical Computing > ISBN 3-900051-07-0 > Platform: x86_64-unknown-linux-gnu (64-bit) > > R is free software and comes with ABSOLUTELY NO WARRANTY. > You are welcome to redistribute it under certain conditions. > Type 'license()' or 'licence()' for distribution details. > > Natural language support but running in an English locale > > R is a collaborative project with many contributors. > Type 'contributors()' for more information and > 'citation()' on how to cite R or R packages in publications. > > Type 'demo()' for some demos, 'help()' for on-line help, or > 'help.start()' for an HTML browser interface to help. > Type 'q()' to quit R. 4c22 < This is mgcv 1.7-11. For overview type 'help("mgcv-package")'. --- > This is mgcv 1.7-13. For overview type 'help("mgcv-package")'. Running 'TVECM_HSTEST.R' Comparing 'TVECM_HSTEST.Rout' to 'TVECM_HSTEST.Rout.save' ...1a2,19 > R Under development (unstable) (2012-02-01 r58249) > Copyright (C) 2012 The R Foundation for Statistical Computing > ISBN 3-900051-07-0 > Platform: x86_64-unknown-linux-gnu (64-bit) > > R is free software and comes with ABSOLUTELY NO WARRANTY. > You are welcome to redistribute it under certain conditions. > Type 'license()' or 'licence()' for distribution details. > > Natural language support but running in an English locale > > R is a collaborative project with many contributors. > Type 'contributors()' for more information and > 'citation()' on how to cite R or R packages in publications. > > Type 'demo()' for some demos, 'help()' for on-line help, or > 'help.start()' for an HTML browser interface to help. > Type 'q()' to quit R. 4c22 < This is mgcv 1.7-11. For overview type 'help("mgcv-package")'. --- > This is mgcv 1.7-13. For overview type 'help("mgcv-package")'. Running 'VECM.R' Comparing 'VECM.Rout' to 'VECM.Rout.save' ...1a2,19 > R Under development (unstable) (2012-02-01 r58249) > Copyright (C) 2012 The R Foundation for Statistical Computing > ISBN 3-900051-07-0 > Platform: x86_64-unknown-linux-gnu (64-bit) > > R is free software and comes with ABSOLUTELY NO WARRANTY. > You are welcome to redistribute it under certain conditions. > Type 'license()' or 'licence()' for distribution details. > > Natural language support but running in an English locale > > R is a collaborative project with many contributors. > Type 'contributors()' for more information and > 'citation()' on how to cite R or R packages in publications. > > Type 'demo()' for some demos, 'help()' for on-line help, or > 'help.start()' for an HTML browser interface to help. > Type 'q()' to quit R. 4c22 < This is mgcv 1.7-11. For overview type 'help("mgcv-package")'. --- > This is mgcv 1.7-13. For overview type 'help("mgcv-package")'. Running 'lstar.R' Comparing 'lstar.Rout' to 'lstar.Rout.save' ...1a2,19 > R Under development (unstable) (2012-02-01 r58249) > Copyright (C) 2012 The R Foundation for Statistical Computing > ISBN 3-900051-07-0 > Platform: x86_64-unknown-linux-gnu (64-bit) > > R is free software and comes with ABSOLUTELY NO WARRANTY. > You are welcome to redistribute it under certain conditions. > Type 'license()' or 'licence()' for distribution details. > > Natural language support but running in an English locale > > R is a collaborative project with many contributors. > Type 'contributors()' for more information and > 'citation()' on how to cite R or R packages in publications. > > Type 'demo()' for some demos, 'help()' for on-line help, or > 'help.start()' for an HTML browser interface to help. > Type 'q()' to quit R. 4c22 < This is mgcv 1.7-11. For overview type 'help("mgcv-package")'. --- > This is mgcv 1.7-13. For overview type 'help("mgcv-package")'. 70c88 < const1 0.489101 0.204915 2.3869 0.0169933 * --- > const1 0.489101 0.204915 2.3869 0.0169934 * 73c91 < const2 -1.024076 2.430087 -0.4214 0.6734519 --- > const2 -1.024076 2.430088 -0.4214 0.6734520 75,76c93,94 < phi2.2 -0.254609 0.585420 -0.4349 0.6636232 < gamma 11.153834 10.004770 1.1149 0.2649140 --- > phi2.2 -0.254609 0.585420 -0.4349 0.6636233 > gamma 11.153834 10.004778 1.1149 0.2649144 154,157c172,175 < const2 -0.672632 1.336387 -0.5033 0.6147 < phi2.1 0.133118 0.384833 0.3459 0.7294 < gamma 100.003138 93.737424 1.0668 0.2860 < th 3.235707 0.021025 153.8984 <2e-16 *** --- > const2 -0.672632 1.336385 -0.5033 0.6147 > phi2.1 0.133118 0.384832 0.3459 0.7294 > gamma 100.003138 93.734135 1.0669 0.2860 > th 3.235707 0.021025 153.8986 <2e-16 *** 271c289 < 1.823767e-05 1.403688e+00 -2.333263e-01 --- > 1.823775e-05 1.403688e+00 -2.333263e-01 291c309 < 1.823767e-05 1.403688e+00 -2.333263e-01 --- > 1.823775e-05 1.403688e+00 -2.333263e-01 315c333 < phi1.2 -2.3333e-01 2.1023e-01 -1.1098 0.267064 --- > phi1.2 -2.3333e-01 2.1023e-01 -1.1099 0.267064 397c415 < trend1 2.5958e-04 1.3092e-03 0.1983 0.8428239 --- > trend1 2.5958e-04 1.3092e-03 0.1983 0.8428240 404,405c422,423 < gamma 1.0000e+02 8.0619e+01 1.2404 0.2148256 < th 2.5681e+00 1.4783e-02 173.7192 < 2.2e-16 *** --- > gamma 1.0000e+02 8.0620e+01 1.2404 0.2148297 > th 2.5681e+00 1.4783e-02 173.7191 < 2.2e-16 *** 479c497 < const1 0.399240 0.283209 1.4097 0.1586269 --- > const1 0.399240 0.283183 1.4098 0.1585895 481,486c499,504 < phi1.2 -0.331696 0.097444 -3.4039 0.0006642 *** < const2 0.782130 0.346224 2.2590 0.0238814 * < phi2.1 0.300946 0.165911 1.8139 0.0696925 . < phi2.2 -0.624613 0.118992 -5.2492 1.528e-07 *** < gamma 871.923077 3743.940767 0.2329 0.8158475 < th 2.560332 0.010128 252.7953 < 2.2e-16 *** --- > phi1.2 -0.331696 0.097428 -3.4045 0.0006628 *** > const2 0.782130 0.346191 2.2592 0.0238681 * > phi2.1 0.300946 0.165911 1.8139 0.0696923 . > phi2.2 -0.624613 0.118978 -5.2498 1.523e-07 *** > gamma 871.923077 3673.244447 0.2374 0.8123687 > th 2.560332 0.010033 255.1885 < 2.2e-16 *** Running 'regime.R' Running 'toMlm.R' Comparing 'toMlm.Rout' to 'toMlm.Rout.save' ...1a2,19 > R Under development (unstable) (2012-02-01 r58249) > Copyright (C) 2012 The R Foundation for Statistical Computing > ISBN 3-900051-07-0 > Platform: x86_64-unknown-linux-gnu (64-bit) > > R is free software and comes with ABSOLUTELY NO WARRANTY. > You are welcome to redistribute it under certain conditions. > Type 'license()' or 'licence()' for distribution details. > > Natural language support but running in an English locale > > R is a collaborative project with many contributors. > Type 'contributors()' for more information and > 'citation()' on how to cite R or R packages in publications. > > Type 'demo()' for some demos, 'help()' for on-line help, or > 'help.start()' for an HTML browser interface to help. > Type 'q()' to quit R. 4c22 < This is mgcv 1.7-11. For overview type 'help("mgcv-package")'. --- > This is mgcv 1.7-13. For overview type 'help("mgcv-package")'. * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... OK * checking re-building of vignettes ... NOTE Error in re-building vignettes: ... Loading required package: MASS Loading required package: nlme Warning: Possible unit root in the low regime. Roots are: 0.5005 Warning: Possible unit root in the low regime. Roots are: 1.012 1.0099 1.0099 1.142 1.0129 1.0114 1.0129 0.9903 1.0611 1.0114 1.0611 0.9903 1.5799 1.012 1.5799 1.142 Warning: Possible unit root in the low regime. Roots are: 0.9845 1.2512 1.0993 0.9845 1.124 1.0993 1.124 0.9705 1.2512 3.2457 1.9084 Warning: With the threshold you gave (5.38) there is a regime with less than trim=15% observations (20.5%, 12.59%, 66.91%, ) Warning: Possible unit root in the low regime. Roots are: 0.9563 1.1975 1.1975 0.9563 1.2621 1.1859 1.1859 1.0224 1.2621 3.6163 8.3793 Warning: Possible unit root in the medium regime. Roots are: 0.8093 0.968 0.9641 0.8093 0.9641 1.2226 1.2226 1.2183 1.4373 1.4373 1.2183 Warning: running command '"d:\compiler\texmf\miktex\bin\texi2dvi.exe" --quiet --pdf "ThCointOverview.tex" -I "d:/Rcompile/recent/R-2.13.2/share/texmf/tex/latex" -I "d:/Rcompile/recent/R-2.13.2/share/texmf/bibtex/bst"' had status 1 Error: running 'texi2dvi' on 'ThCointOverview.tex' failed LaTeX errors: rview.tex:930: LaTeX Error: File `ThCointOverviewGridSearchTVECM' not found. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help I could not locate the file with any of these extensions: rview.tex:1591: LaTeX Error: File `ClusterTime' not found. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help I could not locate the file with any of these extensions: Execution halted * checking PDF version of manual ... OK