* using log directory 'd:/Rcompile/CRANpkg/local/2.13/xpose4data.Rcheck' * using R version 2.13.2 (2011-09-30) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'xpose4data/DESCRIPTION' ... OK * this is package 'xpose4data' version '4.3.2' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'xpose4data' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE import.graph.par: no visible binding for global variable 'xpboj' is.readable.file: no visible global function definition for 'platform' is.readable.file: no visible global function definition for 'access' make.sb.data: no visible global function definition for 'xpose.bin' read.lst: no visible global function definition for 'platform' read.lst6: no visible global function definition for 'platform' reset.graph.par: no visible binding for global variable 'xpboj' * checking Rd files ... NOTE prepare_Rd: change.parm.Rd:30-31: Dropping empty section \examples prepare_Rd: functions.Rd:59-60: Dropping empty section \examples prepare_Rd: make.sb.data.Rd:35-37: Dropping empty section \details prepare_Rd: make.sb.data.Rd:38-39: Dropping empty section \value prepare_Rd: make.sb.data.Rd:45-46: Dropping empty section \note prepare_Rd: make.sb.data.Rd:40-41: Dropping empty section \references prepare_Rd: make.sb.data.Rd:47-48: Dropping empty section \seealso prepare_Rd: make.sb.data.Rd:49-51: Dropping empty section \examples prepare_Rd: nsim.Rd:41-42: Dropping empty section \value prepare_Rd: read.TTE.sim.data.Rd:34-35: Dropping empty section \details prepare_Rd: read.TTE.sim.data.Rd:36-39: Dropping empty section \value prepare_Rd: read.TTE.sim.data.Rd:45-46: Dropping empty section \note prepare_Rd: read.TTE.sim.data.Rd:40-41: Dropping empty section \references prepare_Rd: read.TTE.sim.data.Rd:48-49: Dropping empty section \seealso prepare_Rd: read.TTE.sim.data.Rd:50-51: Dropping empty section \examples prepare_Rd: read.nm.output.Rd:98-99: Dropping empty section \examples prepare_Rd: read.npc.vpc.results.Rd:68-69: Dropping empty section \note prepare_Rd: read.npc.vpc.results.Rd:66: Dropping empty section \references prepare_Rd: read.npc.vpc.results.Rd:74-75: Dropping empty section \examples prepare_Rd: read.vpctab.Rd:64-65: Dropping empty section \details prepare_Rd: read.vpctab.Rd:70-71: Dropping empty section \note prepare_Rd: xpose.data-class.Rd:74-75: Dropping empty section \examples prepare_Rd: xpose.prefs-class.Rd:152-153: Dropping empty section \examples * checking Rd metadata ... OK * checking Rd cross-references ... WARNING Missing link(s) in documentation object 'd:/RCompile/CRANpkg/local/2.13/xpose4data/man/change.graphical.parameters.Rd': 'reorder.factor' See the information in section 'Cross-references' of the 'Writing R Extensions' manual. * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... WARNING Assignments in \usage in documentation object 'Data': dataframe <- Data(object, inclZeroWRES = FALSE, onlyfirst = FALSE, subset = NULL) dataframe <- SData(object, inclZeroWRES = FALSE, onlyfirst = FALSE, subset = NULL, samp = NULL) Assignments in \usage in documentation object 'add.functions': object <- add.absval(object, listall = TRUE, classic = FALSE) object <- add.dichot(object, listall = TRUE, classic = FALSE) object <- add.exp(object, listall = TRUE, classic = FALSE) object <- add.log(object, listall = TRUE, classic = FALSE) object <- add.tad(object, classic = FALSE) Assignments in \usage in documentation object 'change.graphical.parameters': object <- change.ab.graph.par(object, classic = FALSE) object <- change.bw.graph.par(object, classic = FALSE) object <- change.cond.graph.par(object, classic = FALSE) object <- change.dil.graph.par(object, classic = FALSE) object <- change.label.par(object, classic = FALSE) object <- change.lm.graph.par(object, classic = FALSE) object <- change.misc.graph.par(object, classic = FALSE) object <- change.pi.graph.par(object, classic = FALSE) object <- change.smooth.graph.par(object, classic = FALSE) Assignments in \usage in documentation object 'change.misc.parameters': object <- change.cat.levels(object, classic = FALSE, cat.limit = NULL, ...) object <- change.dv.cat.levels(object, classic = FALSE, dv.cat.limit = NULL, ...) object <- change.cat.cont(object, listall = TRUE, classic = FALSE, to.cat.vec = NULL, to.cont.vec = NULL, change.type.vec = NULL, ...) object <- change.miss(object, classic = FALSE) object <- change.subset(object, classic = FALSE) object <- set.doc(object, classic = FALSE) Assignments in \usage in documentation object 'change.var.name': object <- change.var.name(object, classic = FALSE) Assignments in \usage in documentation object 'change.xlabel': object <- change.xlabel(object, listall = FALSE, classic = FALSE) Assignments in \usage in documentation object 'import.graph.par': object <- import.graph.par(object, classic = FALSE) object <- xpose.read(object, file = "xpose.ini") Assignments in \usage in documentation object 'import.variable.definitions': object <- import.variable.definitions(object, classic = FALSE) Assignments in \usage in documentation object 'xlabel': xlabel(object) <- c(x, newlabel) Assignments in \usage in documentation object 'reset': object <- reset.graph.par(object, classic = FALSE) object <- reset.variables(object, classic = FALSE) Assignments in \usage in documentation object 'xvardef': xvardef(object) <- c(x, newdef) Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See the chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK * checking PDF version of manual ... OK WARNING: There were 2 warnings, see 'd:/Rcompile/CRANpkg/local/2.13/xpose4data.Rcheck/00check.log' for details