compositions-package	compositions
%*%	matmult
%*%.acomp	matmultacomp
%*%.aplus	matmultacomp
%*%.default	matmult
%*%.rmult	rmultmatmult
*.acomp	acomparith
*.aplus	aplusarithm
*.rcomp	rcomparithm
*.rmult	rmultarithm
*.rplus	rplusarithm
+.acomp	perturbe
+.aplus	aplusarithm
+.rcomp	rcomparithm
+.rmult	rmultarithm
+.rplus	rplusarithm
-.acomp	perturbe
-.aplus	aplusarithm
-.rcomp	rcomparithm
-.rmult	rmultarithm
-.rplus	rplusarithm
/.acomp	acomparith
/.aplus	aplusarithm
/.rcomp	rcomparithm
/.rmult	rmultarithm
/.rplus	rplusarithm
acomp	acomp
acompDirichletGOF.test	goftests
acompGOF.test	goftests
acompGOF.test.formula	goftests
acompGOF.test.list	goftests
acompmargin	acompmargin
acompNormalGOF.test	goftests
acompNormalLocation.test	tests
acompNormalSpread.test	tests
acompTwoSampleGOF.test	goftests
Activity10	Activity10
Activity31	Activity31
AitchisonDistributionIntegrals	raitchison
alr	alr
alrInv	alr
AnimalVegetation	AnimalVegetation
aplus	aplus
apt	apt
aptInv	apt
ArcticLake	ArcticLake
arrows3D	arrows3d
arrows3D.default	arrows3d
as.data.frame.acomp	asdataframe
as.data.frame.aplus	asdataframe
as.data.frame.rcomp	asdataframe
as.data.frame.rmult	asdataframe
as.data.frame.rplus	asdataframe
as.missingSummary	plotmissingsummary
axis3D	axis3d
balance	balancebase
balance.acomp	balancebase
balance.aplus	balancebase
balance.rcomp	balancebase
balance.rplus	balancebase
balance01	balancebase
balance01.acomp	balancebase
balance01.rcomp	balancebase
balanceBase	balancebase
balanceBase.acomp	balancebase
balanceBase.aplus	balancebase
balanceBase.rcomp	balancebase
balanceBase.rplus	balancebase
barplot.acomp	barplot
barplot.aplus	barplot
barplot.ccomp	barplot
barplot.rcomp	barplot
barplot.rplus	barplot
Bayesite	Bayesite
BDL	compmiss
BDLvalue	compmiss
binary	binary
binary2logical	binary
biplot3D	biplot3d
biplot3D.default	biplot3d
biplot3D.princomp	biplot3d
bit	binary
bit.character	binary
bit.numeric	binary
bit<-	binary
bit<-.character	binary
bit<-.numeric	binary
bitCount	binary
Blood23	Blood23
Boxite	Boxite
boxplot.acomp	boxplot
boxplot.aplus	boxplot
boxplot.rcomp	boxplot
boxplot.rplus	boxplot
ccomp	ccomp
ccompMultinomialGOF.test	ccompgof
ccompPoissonGOF.test	ccompgof
cdt	cdt
cdt.acomp	cdt
cdt.aplus	cdt
cdt.ccomp	cdt
cdt.default	cdt
cdt.factor	cdt
cdt.rcomp	cdt
cdt.rmult	cdt
cdt.rplus	cdt
cdtInv	cdt
cdtInv.acomp	cdt
cdtInv.aplus	cdt
cdtInv.ccomp	cdt
cdtInv.default	cdt
cdtInv.rcomp	cdt
cdtInv.rmult	cdt
cdtInv.rplus	cdt
cgram2vgram	lrvgram
ClamEast	ClamEast
ClamWest	ClamWest
clo	clo
clr	clr
clr2ilr	clr2ilr
clrInv	clr
clrvar2ilr	clr2ilr
ClusterFinder1	clusterfinder
ClusterFinder1.acomp	clusterfinder
CoDaDendrogram	codadendrogram
coloredBiplot	coloredbiplot
colorsForOutliers1	colorsforoutliers
colorsForOutliers2	colorsforoutliers
CompLinModCoReg	CompLinModCo
compOKriging	compOKriging
composition.missing	compmiss
composition.missings	compmiss
compositions	compositions
compositions.missing	compmiss
compositions.missings	compmiss
ConfRadius	ConfRadius
convex.rcomp	rcomparithm
cor	cor
cor.acomp	cor
cor.aplus	cor
cor.default	cor
cor.rcomp	cor
cor.rmult	cor
cor.rplus	cor
cov	varAcomp
cov.acomp	varAcomp
cov.aplus	varAcomp
cov.default	varAcomp
cov.rcomp	varAcomp
cov.rmult	varAcomp
cov.rplus	varAcomp
Coxite	Coxite
cpt	cpt
cptInv	cpt
dAitchison	raitchison
Data01	Hongite
Data02	Kongite
Data03	Boxite
Data04	Coxite
Data05	ArcticLake
Data06	SkyeAFM
Data07	Supervisor
DATA08	HouseholdExp
Data09	Metabolites
DATA10	Activity10
Data11	WhiteCells
Data12	Yatquat
Data13	Firework
Data14	ClamEast
Data15	ClamWest
Data16	SerumProtein
Data17	DiagnosticProb
DATA18	Glacial
Data19	PogoJump
Data20	Sediments
Data21	Bayesite
Data22	ShiftOperators
Data23	Blood23
Data24	Skulls
Data25	AnimalVegetation
DATA31	Activity31
DiagnosticProb	DiagnosticProb
dist	dist
dist.default	dist
dlnorm.rplus	rlnorm
dnorm.acomp	rnorm
dnorm.aplus	rnorm
dnorm.rmult	rnorm
ellipses	ellipses
ellipses.acomp	ellipses
ellipses.aplus	ellipses
ellipses.rcomp	ellipses
ellipses.rmult	ellipses
ellipses.rplus	ellipses
endmemberCoordinates	endmemberCoordinates
endmemberCoordinates.acomp	endmemberCoordinates
endmemberCoordinates.aplus	endmemberCoordinates
endmemberCoordinates.default	endmemberCoordinates
endmemberCoordinates.rplus	endmemberCoordinates
endmemberCoordinatesInv	endmemberCoordinates
endmemberCoordinatesInv.acomp	endmemberCoordinates
endmemberCoordinatesInv.aplus	endmemberCoordinates
endmemberCoordinatesInv.rcomp	endmemberCoordinates
endmemberCoordinatesInv.rmult	endmemberCoordinates
endmemberCoordinatesInv.rplus	endmemberCoordinates
Firework	Firework
fitDirichlet	fitdirichlet
fitSameMeanDifferentVarianceModel	fitsamemean
gadic	binary
Gauss.test	gausstest
geometricmean	geometricmean
geometricmeanCol	geometricmean
geometricmeanRow	geometricmean
getDetectionlimit	getdetectionlimit
Glacial	Glacial
groupparts	groupparts
groupparts.acomp	groupparts
groupparts.aplus	groupparts
groupparts.ccomp	groupparts
groupparts.rcomp	groupparts
groupparts.rplus	groupparts
gsi	gsiinternal
gsi.acompUniformityGOF.test	goftests
gsi.add	gsiadd
gsi.add2pairs	gsipairs
gsi.addclass	gsiaddclass
gsi.addCoorInfo	gsicoorinfo
gsi.buildilrBase	gsimerge2signary
gsi.call	gsicall
gsi.cleanR	gsirecode
gsi.closespread	gsiclosespread
gsi.coorInfo	gsicoorinfo
gsi.csum	gsicsum
gsi.diagExtract	gsidiagExtract
gsi.diagGenerate	gsidiagGenerate
gsi.div	gsiadd
gsi.drop	gsidrop
gsi.eps	gsieps
gsi.eq	gsieq
gsi.expandrcomp	gsiexpandrcomp
gsi.filtercall	gsifiltercall
gsi.geometricmean	geometricmean
gsi.geometricmean.Col	geometricmean
gsi.geometricmean.Row	geometricmean
gsi.geometricmeanCol	geometricmean
gsi.geometricmeanRow	geometricmean
gsi.getBalStruct	gsigetbalstruct
gsi.getCoorInfo	gsicoorinfo
gsi.getD	gsigetD
gsi.getN	gsigetD
gsi.ilrBase2signary	gsimerge2signary
gsi.isSingleRow	gsiisSingleRow
gsi.mapfrom01	gsimap01
gsi.mapin01	gsimap01
gsi.mapmax	gsimap01
gsi.mapmin	gsimap01
gsi.margin	gsimargin
gsi.margin.acomp	gsimargin
gsi.margin.aplus	gsimargin
gsi.margin.rcomp	gsimargin
gsi.margin.rplus	gsimargin
gsi.merge2signary	gsimerge2signary
gsi.mul	gsiadd
gsi.optimalilrBase	gsimerge2signary
gsi.OrderIlr	gsimerge2signary
gsi.orSum	binary
gsi.pairrelativeMatrix	gsipairrelativeMatrix
gsi.pairs	gsipairs
gsi.plain	gsiplain
gsi.plotmargin	gsiplotmargin
gsi.plots	gsipairs
gsi.pStore	rmahalanobis
gsi.recodeC2M	gsirecode
gsi.recodeM2C	gsirecode
gsi.recodeM2Clean	gsirecode
gsi.reset3D	gsireset3d
gsi.rsum	gsicsum
gsi.setCoorInfo	gsicoorinfo
gsi.signary2ilrBase	gsimerge2signary
gsi.simshape	gsisimshape
gsi.spreadToIsoSpace	gsispreadToIsoSpace
gsi.sub	gsiadd
gsi.svdsolve	gsisvdsolve
gsi.textpanel	gsitextpanel
gsi.varwithlosts	gsivarwithlosts
gsi2.invperm	gsiinvperm
has.missings	compmiss
has.missings.default	compmiss
has.missings.rmult	compmiss
HEMF	HouseholdExp
Hongite	Hongite
HouseholdExp	HouseholdExp
Hydrochem	Hydrochem
idt	idt
idt.acomp	idt
idt.aplus	idt
idt.ccomp	idt
idt.default	idt
idt.factor	idt
idt.rcomp	idt
idt.rmult	idt
idt.rplus	idt
idtInv	idt
idtInv.acomp	idt
idtInv.aplus	idt
idtInv.ccomp	idt
idtInv.default	idt
idtInv.rcomp	idt
idtInv.rmult	idt
idtInv.rplus	idt
iit	iit
iitInv	iit
ilr	ilr
ilr2clr	clr2ilr
ilrBase	ilrBase
ilrBaseList	ilrBase
ilrInv	ilr
ilrvar2clr	clr2ilr
ilt	ilt
iltInv	ilt
ipt	ipt
iptInv	ipt
is.acomp	isAcomp
is.aplus	isAcomp
is.BDL	compmiss
is.ccomp	isAcomp
is.MAR	compmiss
is.MNAR	compmiss
is.MNV	compmiss
is.NMV	compmiss
is.rcomp	isAcomp
is.rmult	isAcomp
is.rplus	isAcomp
is.SZ	compmiss
is.WMNAR	compmiss
is.WZERO	compmiss
IsMahalanobisOutlier	ismahalanobisoutlier
isoPortionLines	isoportion
isoPortionLines.acomp	isoportion
isoPortionLines.rcomp	isoportion
isoProportionLines	isoportion
isoProportionLines.acomp	isoportion
isoProportionLines.rcomp	isoportion
jura259	jura
juraset	jura
Kappa	ult
kingTetrahedron	kingtetrahedron
Kongite	Kongite
lines.acomp	lines
lines.aplus	lines
lines.rcomp	lines
lines.rmult	lines
lines.rplus	lines
logratioVariogram	logratioVariogram
MahalanobisDist	mahalanobisdist
MahalanobisDist.acomp	mahalanobisdist
MahalanobisDist.aplus	mahalanobisdist
MahalanobisDist.rcomp	mahalanobisdist
MahalanobisDist.rmult	mahalanobisdist
MahalanobisDist.rplus	mahalanobisdist
MAR	compmiss
MARvalue	compmiss
maxBit	binary
maxBit.character	binary
maxBit.numeric	binary
mcor	mvar
mcor.default	mvar
mcov	mvar
mcov.default	mvar
mean.acomp	meanAcomp
mean.aplus	meanAcomp
mean.ccomp	meanAcomp
mean.col	meanrow
mean.rcomp	meanAcomp
mean.rmult	meanAcomp
mean.row	meanrow
mean.rplus	meanAcomp
meanCol	meanrow
meanRow	meanrow
Metabolites	Metabolites
missingProjector	missingProjector
missingProjector.acomp	missingProjector
missingProjector.aplus	missingProjector
missingProjector.rcomp	missingProjector
missingProjector.rmult	missingProjector
missingProjector.rplus	missingProjector
missings	compmiss
missingsInCompositions	compmiss
missingSummary	missingsummary
missingType	missingsummary
mix.2acomp	mix2compositions
mix.2aplus	mix2compositions
mix.2rcomp	mix2compositions
mix.2rmult	mix2compositions
mix.2rplus	mix2compositions
mix.Read	mixRead
MNAR	compmiss
MNARvalue	compmiss
msd	mvar
msd.default	mvar
mul.rplus	rplusarithm
mvar	mvar
mvar.default	mvar
names.acomp	names
names.aplus	names
names.ccomp	names
names.rcomp	names
names.rmult	names
names.rplus	names
names<-.acomp	names
names<-.aplus	names
names<-.ccomp	names
names<-.rcomp	names
names<-.rmult	names
names<-.rplus	names
NMV	compmiss
noreplot	replot
norm.acomp	norm
norm.aplus	norm
norm.default	norm
norm.rcomp	norm
norm.rmult	norm
norm.rplus	norm
normalize	normalize
normalize.default	normalize
oneOrDataset	oneOrDataset
OutlierClassifier1	outlierclassifier
OutlierClassifier1.acomp	outlierclassifier
outlierplot	outlierplot
outlierplot.acomp	outlierplot
outliersInCompositions	outliers
pairwisePlot	pairwisePlot
pairwisePlot.default	pairwisePlot
parameterPosdefClrMat	parametricMat
parameterPosdefMat	parametricMat
parameterRank1ClrMat	parametricMat
parameterRank1Mat	parametricMat
parametricPosdefClrMat	parametricMat
parametricPosdefMat	parametricMat
parametricRank1ClrMat	parametricMat
parametricRank1Mat	parametricMat
pchForOutliers1	colorsforoutliers
pEmpiricalMahalanobis	rmahalanobis
perturbe	perturbe
perturbe.aplus	aplusarithm
pHotellingsTsq	HotellingsTsq
plot.acomp	plot
plot.aplus	plotpos
plot.ccomp	plot
plot.logratioVariogram	plotlogratioVariogram
plot.missingSummary	plotmissingsummary
plot.princomp.acomp	princompacomp
plot.princomp.aplus	princompaplus
plot.princomp.rcomp	princomprcomp
plot.princomp.rplus	princomprplus
plot.rcomp	plot
plot.relativeLoadings.princomp.acomp	ratioLoadings
plot.relativeLoadings.princomp.aplus	ratioLoadings
plot.relativeLoadings.princomp.rcomp	ratioLoadings
plot.relativeLoadings.princomp.rplus	ratioLoadings
plot.rmult	plotpos
plot.rplus	plotpos
plot3D	plot3d
plot3D.acomp	plot3dacomp
plot3D.aplus	plot3daplus
plot3D.default	plot3d
plot3D.rcomp	plot3dacomp
plot3D.rmult	plot3drmult
plot3D.rplus	plot3drplus
pMaxMahalanobis	rmahalanobis
PogoJump	PogoJump
PoissonGOF.test	ccompgof
power.acomp	acomparith
power.aplus	aplusarithm
powerofpsdmatrix	powerofmatrix
pPortionMahalanobis	rmahalanobis
pQuantileMahalanobis	rmahalanobis
predict.princomp.acomp	princompacomp
predict.princomp.aplus	princompaplus
predict.princomp.rcomp	princomprcomp
predict.princomp.rplus	princomprplus
princomp.acomp	princompacomp
princomp.aplus	princompaplus
princomp.rcomp	princomprcomp
princomp.rmult	princomprmult
princomp.rplus	princomprplus
print.acomp	print
print.aplus	print
print.princomp.acomp	princompacomp
print.princomp.aplus	princompaplus
print.princomp.rcomp	princomprcomp
print.princomp.rplus	princomprplus
print.rcomp	print
print.relativeLoadings.princomp.acomp	ratioLoadings
print.relativeLoadings.princomp.aplus	ratioLoadings
print.relativeLoadings.princomp.rcomp	ratioLoadings
print.relativeLoadings.princomp.rplus	ratioLoadings
print.rmult	rmult
print.rplus	print
qEmpiricalMahalanobis	rmahalanobis
qHotellingsTsq	HotellingsTsq
qMaxMahalanobis	rmahalanobis
qPortionMahalanobis	rmahalanobis
qqnorm.acomp	qqnorm
qqnorm.aplus	qqnorm
qqnorm.rcomp	qqnorm
qqnorm.rplus	qqnorm
R2	R2
R2.default	R2
R2.lm	R2
rAitchison	raitchison
rcomp	rcomp
rcompmargin	rcompmargin
rDirichlet	rDirichlet
rDirichlet.acomp	rDirichlet
rDirichlet.rcomp	rDirichlet
read.geoEAS	readgeoeas
read.geoeas	readgeoeas
relativeLoadings	ratioLoadings
relativeLoadings.princomp.acomp	ratioLoadings
relativeLoadings.princomp.aplus	ratioLoadings
relativeLoadings.princomp.rcomp	ratioLoadings
relativeLoadings.princomp.rplus	ratioLoadings
rEmpiricalMahalanobis	rmahalanobis
replot	replot
replotable	replot
rlnorm.rplus	rlnorm
rMaxMahalanobis	rmahalanobis
rmult	rmult
rmultinom.ccomp	rpois
rnorm.acomp	rnorm
rnorm.aplus	rnorm
rnorm.ccomp	rnorm
rnorm.rcomp	rnorm
rnorm.rmult	rnorm
rnorm.rplus	rnorm
robust	robustness
robustnessInCompositions	robustness
rplus	rplus
rpois.ccomp	rpois
rPortionMahalanobis	rmahalanobis
Rsquare	R2
runif.acomp	runif
runif.rcomp	runif
sa.dirichlet	SimulatedAmounts
sa.dirichlet.dil	SimulatedAmounts
sa.dirichlet.mix	SimulatedAmounts
sa.dirichlet5	SimulatedAmounts
sa.dirichlet5.dil	SimulatedAmounts
sa.dirichlet5.mix	SimulatedAmounts
sa.groups	SimulatedAmounts
sa.groups.area	SimulatedAmounts
sa.groups.dil	SimulatedAmounts
sa.groups.mix	SimulatedAmounts
sa.groups5	SimulatedAmounts
sa.groups5.area	SimulatedAmounts
sa.groups5.dil	SimulatedAmounts
sa.groups5.mix	SimulatedAmounts
sa.lognormals	SimulatedAmounts
sa.lognormals.dil	SimulatedAmounts
sa.lognormals.mix	SimulatedAmounts
sa.lognormals5	SimulatedAmounts
sa.lognormals5.dil	SimulatedAmounts
sa.lognormals5.mix	SimulatedAmounts
sa.missings	SimulatedAmounts
sa.missings5	SimulatedAmounts
sa.outliers1	SimulatedAmounts
sa.outliers2	SimulatedAmounts
sa.outliers3	SimulatedAmounts
sa.outliers4	SimulatedAmounts
sa.outliers5	SimulatedAmounts
sa.outliers6	SimulatedAmounts
sa.tnormals	SimulatedAmounts
sa.tnormals.dil	SimulatedAmounts
sa.tnormals.mix	SimulatedAmounts
sa.tnormals5	SimulatedAmounts
sa.tnormals5.dil	SimulatedAmounts
sa.tnormals5.mix	SimulatedAmounts
sa.uniform	SimulatedAmounts
sa.uniform.dil	SimulatedAmounts
sa.uniform.mix	SimulatedAmounts
sa.uniform5	SimulatedAmounts
sa.uniform5.dil	SimulatedAmounts
sa.uniform5.mix	SimulatedAmounts
scalar	scalar
scalar.default	scalar
scale	scale
scale.acomp	scale
scale.aplus	scale
scale.default	scale
scale.rcomp	scale
scale.rmult	scale
scale.rplus	scale
Sediments	Sediments
segments.acomp	segments
segments.aplus	segments
segments.rcomp	segments
segments.rmult	segments
segments.rplus	segments
SerumProtein	SerumProtein
ShiftOperators	ShiftOperators
simpleMissingSubplot	simplemissingplot
SimulatedAmounts	SimulatedAmounts
simulateMissings	simulatemissing
Skulls	Skulls
SkyeAFM	SkyeAFM
split.acomp	split
split.aplus	split
split.ccomp	split
split.rcomp	split
split.rmult	split
split.rplus	split
straight	straight
straight.acomp	straight
straight.aplus	straight
straight.rcomp	straight
straight.rmult	straight
straight.rplus	straight
summary.acomp	summaryAcomp
summary.aplus	summaryAplus
summary.rcomp	summaryRcomp
summary.rmult	summaryAplus
summary.rplus	summaryAplus
sumMissingProjector	sumprojector
sumMissingProjector.acomp	sumprojector
sumMissingProjector.aplus	sumprojector
sumMissingProjector.rcomp	sumprojector
sumMissingProjector.rmult	sumprojector
sumMissingProjector.rplus	sumprojector
Supervisor	Supervisor
SZ	compmiss
SZvalue	compmiss
ternaryAxis	ternaryAxis
totals	totals
totals.acomp	totals
totals.aplus	totals
totals.ccomp	totals
totals.rcomp	totals
totals.rplus	totals
tryDebugger	tryDebugger
uciptInv	ipt
ult	ult
ultInv	ult
unbinary	binary
var	varAcomp
var.acomp	varAcomp
var.aplus	varAcomp
var.default	varAcomp
var.lm	varmlm
var.mlm	varmlm
var.rcomp	varAcomp
var.rmult	varAcomp
var.rplus	varAcomp
variation	variation
variation.acomp	variation
variation.aplus	variation
variation.default	variation
variation.rcomp	variation
variation.rmult	variation
variation.rplus	variation
vcovAcomp	vcovAcomp
vgmFit	vgmFit
vgmFit2lrv	vgmFit
vgmGetParameters	vgmFit
vgmGof	vgmFit
vgmSetParameters	vgmFit
vgram.exp	variograms
vgram.gauss	variograms
vgram.lin	variograms
vgram.nugget	variograms
vgram.pow	variograms
vgram.sph	variograms
vgram2lrvgram	lrvgram
vp.boxplot	boxplot
vp.logboxplot	boxplot
vp.qqnorm	qqnorm
whichBits	binary
WhiteCells	WhiteCells
Yatquat	Yatquat
zeroreplace	zeroreplace
