addstimuli              Add dummy stimulus nodes to the data matrix.
bestgam                 Fit an optimal smoothing spline to a data
                        vector y, indexed by time vector tp.
center_ddepn            Perform centering of single replicate time
                        courses.
compare.graphs.tc       compare.graphs.tc
create_signetwork       inhibMCMC Analysis: find significant edges from
                        independent MCMC chains
ddepn                   ddepn
ddepn-package           Dynamic Deterministic Effects Propagation
                        Networks: Infer signalling networks from high
                        througput array data.
format_ddepn            Performs renaming of the colnames of dataset
                        hcc1954 to make it suitable as input for the
                        inference.
gelman_diag             Convergence check by Gelman's potential scale
                        reduction.
get.phi.final           Construct final network from GA or mcmc result.
hcc1954                 hcc1954
kegggraph.to.detailed.adjacency
                        kegggraph.to.detailed.adjacency
kegggraphs              kegggraphs
makedata                Generate artificial dataset given a network and
                        list of stimuli.
mcmc_ddepn              mcmc_ddepn - Perform MCMC sampling for DDEPN.
netga                   netga - Perform network search using a genetic
                        algorithm.
plot_edgeconfidences    Boxplots of edge confidences obtained in
                        inhibMCMC.
plot_mcmctraces         Trace plot for inhibMCMC posterior traces.
plot_profiles           Plot the data and inferred model parameters.
plotdetailed            plotdetailed get.labels get.arrowhead
                        get.arrowtail
plotrepresult           Plot result of reconstruction.
prior                   Calculate a structure prior. Usually called
                        internally.
run_checks              DDEPN function tests.
signalnetwork           Sample a random signalling network.
simulatedata            simulatedata
