msProcess-package	msProcess-package
apply	apply
apply.default	apply
apply.msSet	apply
argNames	argNames
Arith,numeric,proteins-method	proteins
Arith,proteins,integer-method	proteins
Arith,proteins,missing-method	proteins
Arith,proteins,proteins-method	proteins
assignEvent	assignEvent
binblocks2SQLite	dbimportBin2Sqlite
calibrants	calibrants
calibrants-class	calibrants
calibrator	calibrator
calibrator-class	calibrator
catchEvent	catchEvent
coef.msCalibrate	msCalibrate
Compare,numeric,proteins-method	proteins
Compare,proteins,integer-method	proteins
Compare,proteins,proteins-method	proteins
cypherGenXML2Bin	dbcypherGenXML2Bin
cypherGenXMList2BinBlocks	dbcypherGenXML2Bin
eventHistory	eventHistory
existHistory	existHistory
formula.msCalibrate	msCalibrate
getHistory	getHistory
image.msSet	msSet
importBin2Sqlite	dbimportBin2Sqlite
importXMLDir	dbimportXMLDir
ion.focus.delay	ion.focus.delay
isProcessRecorded	isProcessRecorded
Logic,ANY,proteins-method	proteins
Logic,proteins,ANY-method	proteins
matchObject	matchObject
Math,proteins-method	proteins
Math2,proteins-method	proteins
merge.msList	msList
msAlign	msAlign
msAlignCluster	msAlign
msAlignGap	msAlign
msAlignMRD	msAlign
msAlignVote	msAlign
msAssign	msAssign
msCalibrate	msCalibrate
msCharge	msCharge
msDenoise	msDenoise
msDenoiseMRD	msDenoiseMRD
msDenoiseSmooth	msDenoiseSmooth
msDenoiseWavelet	msDenoiseWavelet
msDenoiseWaveletThreshold	msDenoiseWaveletThreshold
msDetrend	msDetrend
msExists	msAssign
msExtrema	msExtrema
msGet	msAssign
msGlobalEnv	msAssign
msHelp	msHelp
msImport	msImport
msImportCiphergenXML	msImportCiphergenXML
msLaunchExample	msLaunchExample
msList	msList
msList-class	msList
msLogic	msLogic
msNewEnv	msAssign
msNoise	msNoise
msNormalize	msNormalize
msNormalizeSNV	msNormalizeSNV
msNormalizeTIC	msNormalizeTIC
msObjects	msObjects
msPeak	msPeak
msPeakCWT	msPeakCWT
msPeakInfo	msPeakInfo
msPeakMRD	msPeakMRD
msPeakSearch	msPeakSearch
msPeakSimple	msPeakSimple
msPlot	msPlot
msPrepare	msPrepare
msProcess	msProcess-package
msQualify	msQualify
msQuantify	msQuantify
msQuantifyCount	msQuantifyCount
msQuantifyIntensity	msQuantifyIntensity
msRemove	msAssign
msSet	msSet
msSet-class	msSet
msSmoothApprox	msSmoothApprox
msSmoothKsmooth	msSmoothKsmooth
msSmoothLoess	msSmoothLoess
msSmoothMean	msSmoothMean
msSmoothMonotone	msSmoothMonotone
msSmoothMRD	msSmoothMRD
msSmoothSpline	msSmoothSpline
msSmoothSupsmu	msSmoothSupsmu
msVisual	msVisual
plot,proteins,missing-method	proteins
plot,spectrum,missing-method	spectrum
plot.msCalibrate	msCalibrate
plot.msDenoiseWaveletThreshold	msDenoiseWaveletThreshold
plot.msList	msList
plot.msSet	msSet
predict.msCalibrate	msCalibrate
predict.msQualify	msQualify
princomp2	princomp2
print.eventHistory	eventHistory
print.msCalibrate	msCalibrate
print.msDenoiseWaveletThreshold	msDenoiseWaveletThreshold
print.msList	msList
print.msSet	msSet
print.summary.msList	msList
print.summary.msSet	msSet
proteins	proteins
proteins-class	proteins
qclist	qclist
qcset	qcset
readBinMatrix	dbreadBinDim
rescale	rescale
run	spectrometer
run,spectrometer,calibrants-method	spectrometer
run,spectrometer,proteins-method	spectrometer
setting	setting
setting-class	setting
show,proteins-method	proteins
show,setting-method	setting
spectrometer	spectrometer
spectrometer-class	spectrometer
spectrum	spectrum
spectrum-class	spectrum
Summary,proteins-method	proteins
summary.msList	msList
summary.msList-class	msList
summary.msSet	msSet
throwEvent	throwEvent
writeBinBlocks	dbwriteBinDim
zeroCross	zeroCross
[,msList-method	msList
[,msSet-method	msSet
[,proteins-method	proteins
[.eventHistory	eventHistory
[.msList	msList
[.msSet	msSet
[<-,proteins,ANY,ANY,ANY-method	proteins
[<-,proteins,ANY,ANY,proteins-method	proteins
