DFC                     Indicates Double First Cousins
IBD                     Identical by descent
IBD2                    Identity by descent helper function
Mrode2                  Pedigree from Table 2.1 of Mrode (2005)
Mrode9                  Pedigree, adapted from example 9.1 of Mrode
                        (2005)
SEfun                   Estimate of the standard error for a simulated
                        coefficient of fraternity
aiFun                   Sampling (co)variances and correlations
choose                  Internal function for 'makeDsim'
constrainFun            Function used in the 'proLik' function to
                        produce a profile likelihood for a variance
                        component
findBetween             Determines how close estimates are to a true
                        value
findDFC                 Finds the double first cousins in a pedigree
genAssign               Generation assignment
makeA                   Creates the additive genetic relationship
                        matrix
makeAA                  Creates the additive by additive epistatic
                        genetic relationship matrix
makeD                   Creates the dominance genetic realationship
                        matrix
makeDomEpi              Creates the additive by dominance and dominance
                        by dominance epistatic genetic relationship
                        matrices
makeDsim                Creates the dominance genetic relationship
                        matrix through simulation
nadiv-package           Functions to create non-additive relationship
                        matrices and their inverses
numPed                  Creates a numeric form of a pedigree
plot.proLik             Graphically depicts the profile Likelihood
proLik                  Estimates the profile likelihood of a random
                        effect
sm2list                 Converts a sparse matrix into a three column
                        format.
vchoose                 Helper function for another internal function
                        in 'makeDsim'
warcolak                Pedigree and phenotypic values for a mythical
                        population of Warcolaks
