# Software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and backcrosses

## Documentation for package ‘onemap’ version 2.0-1

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.

## Help Pages

onemap-package | Software for constructing genetic maps
add.marker | Add or Drop Markers From a Sequence
add_drop | Add or Drop Markers From a Sequence
compare | Compare all possible orders (exhaustive search) for a given sequence of markers
def.rf.3pts | Three-point analysis of genetic markers
draw.map | Draw a genetic map
drop.marker | Add or Drop Markers From a Sequence
example.out | Data from a full-sib family derived from two outbred parents
fake.bc.onemap | Simulated data from a backcross population
fake.f2.onemap | Simulated data from a F2 population
group | Assign markers to linkage groups
haldane | Mapping functions Haldane and Kosambi
kosambi | Mapping functions Haldane and Kosambi
make.seq | Create a sequence of markers
map | Construct the linkage map for a sequence of markers
map_func | Mapping functions Haldane and Kosambi
marker.type | Informs the segregation patterns of markers
onemap | Software for constructing genetic maps
order.seq | Search for the best order of markers combining compare and try.seq functions
print.group | Assign markers to linkage groups
print.rf.2pts | Two-point analysis between genetic markers
print.try | Try to map a marker into every possible position between markers
rcd | Rapid Chain Delineation
read.mapmaker | Read data from a Mapmaker raw file
read.outcross | Read data from a segregating full-sib population
record | Recombination Counting and Ordering
rf.2pts | Two-point analysis between genetic markers
rf.graph.table | Plots pairwise recombination fractions and LOD Scores using a color scale.
ripple.seq | Compares and displays plausible alternative orders for a given linkage group
seriation | Seriation
set.map.fun | Defines the default mapping function
try.seq | Try to map a marker into every possible position between markers
ug | Unidirectional Growth
write.map | Write a genetic map to a file