A complete statistical analysis of MALDI-TOF Mass Spectrometry Proteomics data

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Documentation for package ‘pkDACLASS’ version 1.0

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pkDACLASS-package A complete statistical analysis of MALDI-TOF Mass Spectrometry Proteomics data
align.R Aligning Peak Intensities based on mass to charge values
Baseline.R Baseline Correction of Mass Spectrometry Data
Bining.R Binning the data
ca62 Sample Case Data
ca63 Sample Case Data
ca65 Sample Case Data
ca71 Sample Case Data
co62 Sample Data from healthy individual
co63 Sample data from healthy individual
co65 Sample data from healthy individual
co71 Sample data from healthy individual
dat.star Generating Bootstrap Samples
dataGen Generating a Location-shifted Poisson Distribution
Denoising.R Denoising mass spectrometry data
Extract.R Extracting the Isotopic Distribution
kullBack.R Kullback-Leibler divergence measure
mixtureEM.R EM algorithm for Estimating Parameters of the Location-Shifted Poisson Model
modify.R Mapping modifications to respective samples
pkCLASS Peak Classification
pkDACLASS A complete statistical analysis of MALDI-TOF Mass Spectrometry Proteomics data
pkpk.R Peak Picking Algorithm
pValue1.R Bootstrap Pvlaues for the Monoisotopic peak test
realData.R Real Data Analysis
RedIso.R Reducing the Isotopic Distribution