AICc                    Akaike's second-order corrected Information
                        Criterion
Cy0                     Cy0 alternative to threshold cycles as in
                        Guescini et al. (2008)
HQIC                    Hannan-Quinn Information Criterion
KOD                     (K)inetic (O)utlier (D)etection using several
                        methods
LOF.test                Formal lack-Of-Fit test of a nonlinear model
                        against a one-way ANOVA model
LRE                     Calculation of qPCR efficiency by the 'linear
                        regression of efficiency' method
PRESS                   Allen's PRESS (Prediction Sum-Of-Squares)
                        statistic, aka P-square
RMSE                    Root-mean-squared-error of a fitted model
RSS                     Residual sum-of-squares of a fitted model
Rsq                     R-square value of a fitted model
Rsq.ad                  Adjusted R-square value of a fitted model
S27                     qPCR data of the S27a transcript in 15
                        testicular biopsies
akaike.weights          Calculation of Akaike weights/relative
                        likelihoods/delta-AICs
batchstat               Concatenating or calculating statistics on a
                        'pcrbatch'
batsch1                 qPCR dilution experiments from Batsch et al.
                        (2008)
boggy                   qPCR dilution experiments from Boggy et al.
                        (2010)
calib                   Calculation of qPCR efficiency by dilution
                        curve analysis
calib2                  Calculation of qPCR efficiency by dilution
                        curve bootstrapping
curvemean               Building a model which averages a batch of qPCR
                        curves
dyemelt                 Melting curves of a 4-plex qPCR with different
                        fluorescence dyes
eff                     The amplification efficiency curve of a fitted
                        object
efficiency              Calculation of qPCR efficiency and other
                        important qPCR parameters
evidence                Evidence ratio for model comparisons with AIC,
                        AICc or BIC
expcomp                 Comparison of all sigmodal models within the
                        exponential region
expfit                  Calculation of PCR efficiency by fitting an
                        exponential model
fitchisq                The chi-square goodness-of-fit
getPar                  Batch calculation of qPCR fit
                        parameters/efficiencies/threshold cycles with
                        simple output, especially tailored to
                        high-throughput data
guescini1               qPCR dilution experiments from Guescini et al.
                        (2008)
htPCR                   High throughput qPCR experiment with 8858 runs
is.outlier              Outlier summary for objects of class 'modlist'
                        or 'replist'
l7                      The nonlinear/mechanistic models implemented in
                        qpcR
lievens1                qPCR dilution and inhibition data from Lievens
                        et al. (2012)
llratio                 Calculation of likelihood ratios for nested
                        models
maxRatio                The maxRatio method as in Shain et al. (2008)
meanlist                Amalgamation of single data models into an
                        averaged model
meltcurve               Melting curve analysis with (iterative) Tm
                        identification and peak area calculation/cutoff
midpoint                Calculation of the 'midpoint' region
modlist                 Create nonlinear models from a dataframe and
                        coerce them into a list
mselect                 Sigmoidal model selection by different criteria
neill.test              Neill's lack-of-fit test when replicates are
                        lacking
parKOD                  Parameters that can be changed to tweak the
                        kinetic outlier methods
parMAK                  Parameters that can be changed to tweak the
                        mak2/mak3 methods
pcrGOF                  Summarize measures for the goodness-of-fit
pcrbatch                Batch calculation of qPCR efficiency and other
                        qPCR parameters
pcrboot                 Bootstrapping and jackknifing qPCR data
pcrfit                  Workhorse function for qPCR model fitting
pcrimport               Advanced qPCR data import function
pcrimport2              Simple qPCR data import function (i.e. from
                        text files or clipboard)
pcropt1                 Combinatorial elimination of plateau and ground
                        phase cycles
pcropt2                 Elimination of qPCR cycles with low/high impact
                        on fitted parameters
pcrsim                  Simulation of sigmoidal qPCR data with
                        goodness-of-fit analysis
plot.pcrfit             Plotting qPCR data with fitted
                        curves/confidence bands/error bars
predict.pcrfit          Value prediction from a fitted qPCR model
propagate               General error analysis function using different
                        methods
qpcR.news               Display news and changes of qpcR package
                        versions
ratiobatch              Calculation of ratios in a batch format for
                        multiple genes/samples
ratiocalc               Calculation of ratios from qPCR runs
                        with/without reference genes
refmean                 Averaging of multiple reference genes
rep2mod                 Converts a 'replist' back to a 'modlist'
replist                 Amalgamation of single data models into a model
                        containing replicates
reps                    qPCR dilution experiments from the package
                        author
resVar                  Residual variance of a fitted model
resplot                 An (overlayed) residuals barplot
rutledge                qPCR dilution experiments from Rutledge (2004)
sliwin                  Calculation of qPCR efficiency by the
                        'window-of-linearity' method
takeoff                 Calculation of the qPCR takeoff point
testdat                 dataset with noisy data to provoke fitting
                        errors
update.pcrfit           Updating and refitting a qPCR model
vermeulen1              A large-scale qPCR dataset from Vermeulen et
                        al. (2009)
