Creates an interface to BiGG database, provides a framework for simulation and produces flux graphs

Documentation for package ‘BiGGR’ version 1.5

addReact2StoM	adds a user defined reaction to stoichiometric matrix
attachMetAbbre	Attaches abbreviation prefix "M_" for the metabolite identifiers
attachReactAbbre	Attaches abbreviation prefix "R_" for the reaction identifiers
createBiggModel	createBiggModel
E.coli_iAF1260	Ecoli dataset with ORFs and thermodynamic information
E.coli_iJR904	Ecoli genome-scale model
getAdjMfromStoM	getAdjMfromStoM
getEdgeWidths	getEdgeWidths
getFluxGraph	Gets graphical representation of a flux distribution
getRates	Get Optimized Rates
getSMfromModel	Get stochiometric matrix from the model file
getStoichiometricMatrix	Get entire stoichiometric matrix from the metabolic reconstruction for a specific organism exported in SBML format
Glycolysis	Metabolic reconstruction of Glycolysis pathway
gnel	Example graphnel object of Glycolysis pathway
H.pylori_ilT341	H.pylori in silico genome-scale characterization of single and double deletion mutants
H.sapiens_Recon_1	Human metabolic reconstruction
M.barkeri_iAF692	Metabolic reconstruction of M.barkeri
model2hyperdraw	Draws a hypergraph representation from a model file
possibleExternals	possibleExternals
pruneBiggModel	pruneBiggModel
rmvReactFromStoM	removes a reaction from the stoichiometric matrix
S.aureus_iSB619	Metabolic reconstruction of S.aureus
S.cerevisiae_iND750	Metabolic reconstruction of S.cerevisiae