Visualizes the scoring and binning of microsatellite fragment sizes

Documentation for package ‘MsatAllele’ version 1.03

MsatAllele-package	Visualizes and scores microsatellite alleles from electrophoresis fragment sizes
AlleleCum	Plots a cumulative allele size distribution
AlleleHist	Plots an histogram of microsatellite fragment sizes
bin.limits	Writes the limits of bin classes and rounded bin codes
BinStat	Summary bin statistics
DBase	A data base of the type used by this package
DBZn	A data base of the type used by this package with Zostera noltii data
get.allele	Gets the allele code from an electrophoresis fragment size
getpoints	Interacts with AlleleCum graph to list observations
InputFile	A data matrix similar to the tab delimited text file such as needed to data input
mark.bins	Adds bin limits to histograms of fragment size distribution
MsatAllele	Visualizes and scores microsatellite alleles from electrophoresis fragment sizes
OrderByLocus	A function to order the fragment size vector for a given locus
read.ah.file	Reads .ah files from Strand and creates a R data base
read.frag.sizes	Reads tab delimited text files with input fragment sizes creates a R data base
restrict.hist	Plots an histogram of a restricted range of microsatellite fragment sizes
STRandOUT	A table like the one exported in the Strand .ah file
subdataBase	Sorts the data base for a given locus and a restricted range
transDB	Creates a data base object in the form used by other functions in the package
write.PG.file.all	Writes a file with the bin codes with one column per allele
write.PG.file.loc	Writes a file with the bin codes with one column per locus