BE_to_LBLE              Transform a set of parameters from Begin End to
                        LengthB LengthE.
Gratiot                 Leatherback nest counts from Gratiot et al.
                        (2006) Figure 1
LBLE_to_BE              Transform a set of parameters from LengthB
                        LengthE to Begin End.
LBLE_to_L               Transform a set of parameters from LengthB
                        LengthE format to Length
L_to_LBLE               Transform a set of parameters from Length
                        format to LengthB LengthE
adapt_parameters        Extract the parameters from a set of parameters
                        ton conform on a dataset.
add_SD                  Add SD for a fixed parameter.
add_phenology           Create a new dataset or add a timeserie to a
                        previous dataset.
compare_AIC             Compares the AIC of several outputs
extract_result          Extract the set of parameters from a result
                        object.
fit_phenology           Fit the phenology parameters to timeseries of
                        counts.
growlnotify             Send growl notification for MacOs X system.
likelihood_phenology    Estimate the likelihood of timeseries based on
                        a set of parameters.
map_Gratiot             Likelihood map of Leatherback nest counts
map_phenology           Generate a likelihood map varying Phi and
                        Delta.
moon_phase              Moon phase based on a date
par_init                Calculate initial set of parameters.
phenology               Help for phenology package.
phenology-package       The package phenology
phenology_MHmcmc        Run the Metropolis-Hastings algorithm for data
phenology_MHmcmc_p      Generates set of parameters to be used with
                        phenology_MHmcmc()
phenology_swot          Fit a nesting season of marine turtles
plot.mcmcComposite      Plot the result of a MCMC search
plot.phenology          Plot the phenology from a result.
plot.phenologymap       Plot a likelihood map with Delta and Phi
                        varying.
plot_delta              Plot a likelihood lineplot obtained after
                        map_phenology.
plot_phi                Plot the best likelihood for fixed Phi value.
print.phenology         Print the result information from a result
                        object.
print.phenologymap      Print information on a phenologymap object.
print.phenologyout      Print the information from a ouput object.
read_folder             Open all file present in a folder and create a
                        list with these files
remove_site             Removes site information from a set of
                        parameters.
result_Gratiot          Result of the fit of Leatherback nest counts
result_Gratiot1         Result of the fit of Leatherback nest counts
result_Gratiot2         Result of the fit of Leatherback nest counts
result_Gratiot_Flat     Result of the fit of Leatherback nest counts
result_Gratiot_mcmc     Result of the mcmc for Leatherback nest counts
shift_sinusoid          Shift sinusoid information.
summary.mcmcComposite   Summarize the result of a MCMC search
summary.phenology       Print the result information from a result
                        object.
summary.phenologymap    Print information on a phenologymap object.
summary.phenologyout    Print the summary information from a ouput
                        object.
