Package: sybil
Type: Package
Title: sybil - Efficient Constrained Based Modelling in R
Version: 1.1.11
Date: 2013-01-18
Authors@R: c(person("Gabriel", "Gelius-Dietrich", role = c("aut",
        "cre"), email = "geliudie@uni-duesseldorf.de"), person(c("C.",
        "Jonathan"), "Fritzemeier", role = "ctb"), person("Rajen",
        "Piernikarczyk", role = "ctb"), person(c("Marc", "Andre"),
        "Daxer", role = "ctb"), person("Benjamin", "Braasch", role =
        "ctb"), person("Abdelmoneim", "Desouki", role = "ctb"))
Depends: R (>= 2.14.2), Matrix, methods, lattice
Suggests: glpkAPI (>= 1.2.1), cplexAPI (>= 1.2.4), clpAPI (>= 1.2.0),
        lpSolveAPI (>= 5.5.2.0), parallel, grid
Description: The package sybil is a Systems Biology Library for R,
        implementing algorithms for constraint based analyses of
        metabolic networks (e.g. flux-balance analysis (FBA),
        minimization of metabolic adjustment (MOMA), regulatory on/off
        minimization (ROOM), robustness analysis and flux variability
        analysis).
LazyLoad: yes
License: GPL-3
Collate: generics.R validmodelorg.R validoptsol.R validreactId.R
        validreactId_Exch.R validsysBiolAlg.R addAlgorithm.R
        addExchReact.R addReact.R addSolver.R blockedReact.R
        bracket_pairs.R ceilValues.R changeBounds.R changeGPR.R
        changeObjFunc.R checkAlgorithm.R checkDefaultMethod.R
        checkReactId.R check_brackets.R createReactionString.R
        deadEndMetabolite.R doInRound.R doubleFluxDel.R doubleGeneDel.R
        doubleReact.R editEnvir.R findExchReact.R floorValues.R
        fluxVar.R geneDel.R geneDeletion.R generateFluxdels.R
        generateModKey.R generateWT.R getsybilenv.R mod2irrev.R
        modelorg2ExPA.R modelorg2text.R modelorg2tsv.R multiDel.R
        oneFluxDel.R oneGeneDel.R onlyChangeGPR.R onlyCheckGPR.R
        optObj_basicfunc.R optObj_lpSolveAPIcompat.R optimizer.R
        parseBoolean.R ppProcessing.R prepareSubSysMatrix.R
        printLogComment.R printNamedList.R progress.R
        promptSysBiolAlg.R recodeMatrix.R readTEXTmod.R readTSVmod.R
        reassignFwBwMatch.R rmReact.R robAna.R settings.R
        singletonMetabolite.R sybilStack.R ypd.R zzz.R modelorgClass.R
        modelorg_irrevClass.R optObj_pointer.R optObjClass.R
        optObj_clpAPIClass.R optObj_cplexAPIClass.R
        optObj_glpkAPIClass.R optObj_lpSolveAPIClass.R
        sybilErrorClass.R ppProcClass.R netFluxClass.R
        fluxDistributionClass.R reactIdClass.R reactId_ExchClass.R
        optsolClass.R optsol_blockedReactClass.R
        optsol_optimizeProbClass.R optsol_fluxVarClass.R
        optsol_fluxdelClass.R optsol_robAnaClass.R
        optsol_genedelClass.R checksolClass.R summaryOptsolClass.R
        sysBiolAlgClass.R sysBiolAlg_fbaClass.R sysBiolAlg_fvClass.R
        sysBiolAlg_lmomaClass.R sysBiolAlg_momaClass.R
        sysBiolAlg_mtfClass.R sysBiolAlg_roomClass.R sybilLogClass.R
Packaged: 2013-01-18 16:03:28 UTC; gabriel
Author: Gabriel Gelius-Dietrich [aut, cre], C. Jonathan Fritzemeier
        [ctb], Rajen Piernikarczyk [ctb], Marc Andre Daxer [ctb],
        Benjamin Braasch [ctb], Abdelmoneim Desouki [ctb]
Maintainer: Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
Repository: CRAN
Date/Publication: 2013-01-18 17:41:58
Built: R 2.14.2; ; 2013-03-29 15:12:21 UTC; windows
