AdjustRangeAroundGene   Adjusts gene position
AminoAcids              Reference table of amino acids
AnnotateDataframe       Uses NCBI to annotate dataframe
AnnotateSNPFile         Annotates SNPs from a file
AnnotateSNPList         Annotates SNPs from NCBI
Comp                    Produces a complementary DNA sequence
CompareTaxInfo          Identify common lineages of taxonomy terms
ConvertIUPAC            Convert IUPAC allele ambiguity abbreviation
                        codes
ConvertProtein          Converts between different types of amino acid
                        codes.
ConvertPubMedHeadings   Convert MEDLINE abbreviations to descriptions
Delay                   Pauses the code for N seconds
DelayUntil              Pauses the code until a specified time
DivideString            Converts a string into fragment pieces based on
                        a comma or other separator
GenomeSort              Sorts the genome by chromosome and position
GetARFromLocation       Filter your association results.
GetClosestGeneInfo      Obtains information about the closest genes to
                        a list of SNPs.
GetGOs                  Obtains Gene Ontologies from NCBI.
GetGeneInfo             Obtains information about genes from NCBI
GetGeneNames            Obtains information about user defined genes
                        from NCBI
GetGeneTable            Get intron/exon data from NCBI
GetGenesInRegion        Use this to find a list of genes in a
                        particular region of the genome.
GetGenesInSNPs          Returns a vector of genes that the provided
                        SNPs are located within.
GetIDs                  Obtain Entrez ID numbers
GetInteractions         Obtains interacting genes from NCBI
GetLDInfo               Obtain Linkage Disequilibrium (LD) information
                        from HapMap for a given genomic region.
GetNeighGenes           Obtains neighbouring genes from NCBI
GetPathways             Obtains pathways from NCBI for a given set of
                        genes
GetPhenotypes           Obtains pathways from NCBI for a given set of
                        genes
GetPubMed               Obtains references from NCBI's PubMed database
GetPublishedGWAS        Obtains published GWAS association values
GetRegion               Use this to find out a list of snps or genes in
                        a particular region of the genome
GetSNPFlankSeq          Obtains flanking sequence of a set of SNPs from
                        NCBI
GetSNPInfo              Obtains NCBI information about one or more SNPs
GetSNPPosHapMap         Get the chromosomal position of any SNP on the
                        HapMap.
GetSNPProxyInfo         Obtain proxy SNP information for a given SNP
                        that is in close LD with your requested SNP.
GetSNPsInGenes          This function returns a vector of all the SNPs
                        within the boundary of a gene or genes.
GetSNPsInRegion         Obtains a list of SNPs in a particular region
                        of the genome.
GetTax                  Find the NCBI Taxonomy ID number using a search
                        term
GetTaxInfo              Get Taxonomy information
GetUniSTSFromName       Find information about UniSTS from NCBI
GetUniSTSInfo           Obtains information about a given UniSTS from
                        NCBI
GetUniSTSSpecies        Obtains a list of species with data for a given
                        UniSTS
IUPAC                   Produces a dataframe of the IUPAC DNA allele
                        ambiguity abbreviation codes
MakeExcel               Creates an Excel spreadsheet from genetic
                        information.
MakeHTML                Converts genetic annotation dataframes into a
                        HTML document.
MedlineAbbreviations    Produces a dataframe of the Medline
                        abbreviations
MergeSNPsGenes          Function to merge SNP information and Gene
                        information
NatureJobs              Obtains a dataframe of jobs listed on the
                        NatureJobs.com website
OpenPDF                 Opens an available PDF from the PudMed Central
                        database
OpenPMID                Opens the PubMed webpage for a given PMID
OpenURL                 Opens a webbrowser to a given address.
PrintFilters            Displays the list of gene filters available on
                        NCBI.
PrintNCBI2RInfo         Displays summary information about NCBI2R.
PrintNCBI2ROptions      Displays the options in use by NCBI2R.
RemoveSpaces            Removes spaces at the start of a string and the
                        end of a string
Rev                     Produces a reverse DNA sequence
RevComp                 Produces a reverse complement DNA sequence
ScanForGenes            Filters your association results for those
                        found within a list of genes.
ScanForSNPs             Filters your association results for those that
                        match a list of SNPs.
SplitGenes              Checks and converts SNP information for
                        multiple genes.
UpdateCheck             Checks for a more recent version of NCBI2R
VisualiseRegion         Produces a graphical representation of the
                        region, with the exons (optional).
gwas                    Sample gwas data from a fictional project
