Secondary Trait Association analysis for Rare variants via SEQuence data

Documentation for package ‘STARSEQ’ version 1.02

STAR-package	Secondary Trait Association analysis for Rare variants via SEQuence data
cmc.uniqtl.pop	CMC Test for Population-basd Studies of Quantitative Trait
datagen.pleiomap	Simulation Function for the STARSEQ method
fit.null.2nd.ex.full.pleiomap	Model Fitting Function for STARSEQ
kbac.uniqtl.pop.C	KBAC Test for Population-based Studies of Quantitative Trait
kbac.weight	Weighting Function for KBAC
lse.wss.misshsq	Least Square Estimates for Genetic Average Effect and Locus Heritability in the Weighted Sum Statistics
mat2ped	Transform Mat format to PED format
meta.p	P-value Based Meta-Analysis
minus.L0.2nd.ex.full.pleiomap	Minus Log-likelihoood Function for STAR
mySKAT	Implementation of SKAT Test
recode.uniqtl	Recode Multi-site Genotypes for KBAC Test
set.compare	Comparing 2 Ordered Set of Values
set.intersect	Calculate Intersection of Two Sets
skat.uniqtl.simple.C	SKAT Test for Population-basd Studies of Quantitative Trait
STAR	Secondary Trait Association analysis for Rare variants via SEQuence data
STAR.test	Secondary Trait Association Analysis with Rare Variants
std.score.proscore.stat.mat	Single Variant Score Statistics for a Genotype Matrix
std.score.stat.new	Standard Score Statistics from Prospective Likelihood
vt.uniqtl.pop.C	VT Test for Population-basd Studies of Quantitative Trait
wss.lin.simple.C	WSS Test for Population-basd Studies of Quantitative Trait as extended by Lin and Tang
wss.uniqtl.pop.C	WSS Test for Population-basd Studies of Quantitative Trait