Fit negative binomial mixed-effect regression model.

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Documentation for package ‘lmeNB’ version 1.2

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CP.ar1.se Compute a conditional probability of observing a set of counts as extreme as the new observations of a subjectvisit given the previous observations of the same subject based on the negative binomial mixed-effect AR(1) model.
CP.se Compute a conditional probability of observing a set of counts as extreme as the new observations of a subject given the previous observations from the same subject based on the negative binomial mixed effect independent model.
CP1.ar1 Compute a conditional probability of observing a set of counts as extreme as the new observations of a subjectvisit given the previous observations of the same subject based on the negative binomial mixed-effect AR(1) model.
formulaToDat Performs the maximum likelihood estimation for the negative binomial mixed-effect independent model
index.batch Compute the point estimate and its 95 of the conditional probability _ Pr(q(Y_i,new)>=q(y_i,new)| Y_i,pre=y_i,pre)_
jCP Compute a conditional probability of observing a set of counts as extreme as the new observations of a subject given the previous observations from the same subject based on the negative binomial mixed effect independent model.
jCP.ar1 Compute a conditional probability of observing a set of counts as extreme as the new observations of a subjectvisit given the previous observations of the same subject based on the negative binomial mixed-effect AR(1) model.
lmeNB Performs the maximum likelihood estimation for the negative binomial mixed-effect model. This function is a wrapper for 'mle.fun', 'mle.ar1.fun', 'mle.a3.fun' and 'mle.ar1.non3'.
MCCP.ar1 Compute a conditional probability of observing a set of counts as extreme as the new observations of a subjectvisit given the previous observations of the same subject based on the negative binomial mixed-effect AR(1) model.
mle.a3.fun Fit the semi-parametric negative binomial mixed-effect independent model.
mle.ar1.fun Performs the maximum likelihood estimation for the negative binomial mixed-effect AR(1) model
mle.ar1.non3 Fit the semi-parametric negative binomial mixed-effect AR(1) model.
mle.fun Performs the maximum likelihood estimation for the negative binomial mixed-effect independent model
rNBME.R Simulate a dataset from the negative binomial mixed-effect independent/AR(1) model