AUC                     Calculate AUC Using the Trapezoidal Method
CLNR                    Delete Files and Directories
NONR                    Run NONMEM
Ops.keyed               Operator Syntax for Joining Keyed Data Frames
PLOTR                   Create Diagnostic Plots for a NONMEM Run
Tmax                    Calculate Tmax
Tmin                    Calculate Tmin
accept                  Document Acceptance of an R Installation
acceptance              List the History of Acceptance.
addl                    Calculate a NONMEM ADDL data item from explicit
                        records.
align.decimal           Format Numeric Vectors Specially
as.best.default         Coerce data unambiguously to numeric or
                        character
as.comment              Create and Manipulate Comment Objects
as.data.frame.block     Convert a Block of Lines to Data Frame
as.flag                 Create and Manipulate Flags
as.init                 Work with Initial Estimates as Objects
as.keyed                Create and Manipulate Keyed Data Frames
as.nm                   Create and Manipulate nm Objects
as.nmctl                Create, Manipulate, Read, and Write NONMEM
                        Control Streams
as.pxml.ext             Convert a Param File to XML
as.second               Interconvert Nominal Time Units
as.spec                 Create and Manipulate spec Objects
as.unilog.run           Create a Run Log for NONMEM7 using NONMEM6
                        Format
as.vector.keyed         Binary Operators for Set Relations
as.xml                  Represent an Object as XML
attribute               Encode an Attribute for an XML Open Tag
aug                     Augment a List-like Object
backtrans               Back-transform Columns in a Data Frame
bin                     Calculate Bin Sizes and Limits for a Vector
bounds                  Calculate Normal Quantiles at Boundaries of
                        Probability Intervals
bracket                 Create an XML Tag
breaks                  Identify Boundaries Between Sets of Elements
bundleRead              Read Data Files from a Directory into a List
c.timeline              Support for timepoint Classes
cast-methods            Methods for Function 'cast' in Package
                        'reshape'
check.subjects          Summarize Columns of Subject Data
closers                 Calculate Closing Text for Nested Script Levels
codes                   Recover Metadata from spec Objects and their
                        Components
colname<-               Change Selected Names
combinations            Display Combinations of Column Values
command                 Format a Latex Command
compileflag             Develop a Value for a Compiler Resource on the
                        Grid
compiler                Extract the Compiler Name from an NMQual
                        Configuration File
compute.cwres           Compute the Conditional Weighted Residuals
config                  Identify the Configuration File in an
                        NMQual-mediated NONMEM installation.
constant                Test for Nested Factors
contains                Test a Character Vector for Occurences of a
                        Pattern
convertLines            Convert Line Endings
css                     Calculate One-Compartment Model Properties
cv                      Compute Coefficient of Variation for Normal and
                        Log-Normal Data.
dataFormat              Integrate NONMEM Data for Plotting
dataSynthesis           Build a Standard Plotting Data Set for a Given
                        NONR Run
deranged                Modify Assembly of nm Objects
diagnosticPlots         Create Diagnostic Plots
digest                  Diagnose Static Data Relationships
electronicAppendix      Make an FDA-style Electronic Appendix from a
                        Subversioned Directory.
encode                  Encode Factor-like Levels and Labels as a
                        Simple String
episcript               Run an Epilog Script in a Pre-populated
                        Environment
extract                 Extract a Parenthetically-grouped Substring of
                        a Regular Expression
filename                Construct a Canonical File Name
findNonmemCommand       Find Paths to Available Nonmem Commands
first                   Identify Elements Within Cells Meeting Some
                        Instance of a Condition
fixProblem              Clean Up a Control Stream
fixedwidth              Apply Fixed-width Formatting to a Data Frame
ftable2data.frame       Convert ftable to data.frame
getCovs                 Return Non-commented Non-duplicated Rows of a
                        NONMEM Data Set
getCwres                Return the Conditional Weighted Residuals
                        Pertinent to a Given Run
getPars                 Return the Non-duplicated (ID) Rows
                        Corresponding to the Specified Filename
getTabs                 Return the Observation Rows (EVID==0)
                        Corresponding to the Specified Filename
getdname                Extract the Path and File from the DATA Block
                        in the Control Stream Associated with a
                        Filename
glue                    Paste Items with No Space
groupnames              Construct a Single Vector of Group Names from
                        Possibly Multiple Indices to the Plotting Data
                        Set
half.matrix             Interconvert Between a Symmetric Matrix and a
                        Triangular Matrix
hash                    Supply Comment Characters with Output
helpAdminister          metrumrg: Administrative
helpBrowse              metrumrg: Extended Examples
helpClasses             metrumrg: Data Classes
helpDataFrame           metrumrg: Working with Data Frames
helpList                metrumrg: Defined Functions
helpMatrix              metrumrg: Working with Matrices
helpModel               metrumrg: Modeling
helpPharmacometric      metrumrg: Pharmacometrics
helpPrepare             metrumrg: Data Preparation
helpQuantify            metrumrg: Statistics
helpReport              metrumrg: Reporting
helpSimulate            metrumrg: Simulation
helpStrategic           metrumrg: Strategic Data Manipulation
helpVector              metrumrg: Working with Vectors
helpVisualize           metrumrg: Plotting
ibw                     Calculate Various Clinical Indicators
index                   Visualize Static Data Relationships
inner.data.frame        Limit Data to Inner Quantiles by Imputing NA.
is.alpha                Test For Alphabetic Content
is.defined              Test Whether Values are Defined
is.diagonal             Analyze Parameter Labels
is.latex.token          Determine if String is Valid Latex Command or
                        Environment
is.one.nonalpha         Check That Each Element is a Single Non-letter
is.square.matrix        Test Whether a Matrix is Square
isSubversioned          Check Whether Files Are Subversioned
isSubversionedFile      Check If Single file Is Subversioned
iterations              Harvest Iteration Statistics from NONMEM Output
                        and Convert from Covariance to Correlation
justUnits               Extract Substring of Wiki Math
keyed-class             Class '"keyed"'
latest                  Identify the Latest Variants of Each File as
                        Distinguished by Enclosing Subdirectories
latex.args              Format Latex Command Arguments
latex.options           Format Latex Command Options
locf                    Impute Missing Vector Values
lookup                  Lookup Alternate Versions of Parameter Codes
ltable.data.frame       Convert a Data Frame to a Latex Table
map                     Map One Set of Values to Another
matches                 Test the Correspondence between a Table and a
                        Specification
melt.keyed              Melt a Keyed Data Frame
metaMerge               Recursively Merge Multiple Tables
metaSub.character       Create Replicate Text files with Systematic
                        Substitutions
metrumrg-package        Pharmacometric Tools for Data Preparation,
                        Modeling, Simulation, and Reporting
metrumrgURL             View a metrumrg Package File
monotonic               Determine Whether a Vector is Monotonic
naInContext             Display Missing Values in Context
nasum                   Count Number of 'NA' Values in List Items
ncomma                  Report Names as Comma-delimited
nest                    Nest an XML Fragment in a Parent Element
nix                     Identify Unix-like Platforms
nm.pl                   Build Commands to Invoke NONMEM
nmPlots                 An Extensible List of Diagnostic Plots for nm
                        Objects
nmVersion               Extract the NONMEM Version from an NMQual
                        Configuration File
omegacor                Convert NONMEM Omega Covariance Matrix to
                        Correlation Matrix
ord.matrix              Give the Order of a Symmetric Matrix or Half
                        Matrix
packageCheck            Load a Package and Run Package-level Examples
                        for Testing Purposes
panel.densitystrip      Display Distributions with Respect to Reference
                        Values
panel.hist              Plot Histograms Flexibly
panel.stratify          Handle Each Level of a Stripplot Separately
parameter2wiki          Convert Parameter Labels to Wikimath
params                  List Documented Parameters
parens                  Wrap Text in Parentheses
partab                  Construct a Parameter Table
percent                 Calculate Percent.
plot.nm                 Plot An Object of Class nm
plotfilename            Make a Name for a Diagnostic Plot File
pool                    Test Set Relations Among Two Vectors
posmat                  Coerce a Matrix to be Positive Definite
prev                    Check Some Properties of Vectors
purge.dir               Purge a Directory
purge.files             Purge Files
qstat                   Invoke SGE qstat
qsub                    Build Commands to Invoke SGE qsub
random                  Select Random Members of an Object
reapply                 Apply a Function Across Cells of an Indexed
                        Vector, Giving an Identically-indexed Result
resample.data.frame     Create Replicate Data Sets by Stratified
                        Sampling
rinvchisq               Generate Inverse Chi-square Distribution
riwish                  Generate Inverse Wishart Distribution
rlog                    Generate a Combined Run Log from Multiple
                        NONMEM Runs
row2tabular             Format Vector for Latex Tabular Row
runCommand              Issue the System Call That Invokes NONMEM
runNonmem               Process a Request for NONMEM Invocation
runlog                  Convert Model Metadata to Various Formats
runstate                Detect State of a Run Using File Existence
                        Criteria
safe.call               Call a Function Safely
safeQuote               Single-quote Conditionally
setCwres                Append Conditional Weighted Residuals to an
                        Appropriate File
shuffle                 Move the Columns of a Data Frame Relative to
                        Each Other
simblock                Generate Random Effect Deviates for Simulation
simpar                  Create Parameters for Simulation with
                        Uncertainty
snap                    Coerce Values to Nearest of Candidates
sortedInstall           Install Local Source Packages Sorted by
                        Dependency
spaces                  Generate a String of Spaces
specfile                Determine the Expected Path to a Specification
                        File
specification           Create a Data Specification Corresponding to a
                        Particular Data Set
sqrtm                   Help Calculate CWRES
stableMerge             Execute a Stable Left Join
star                    Replace Asterisk in x With y
static                  Return the static portion of an object.
strain                  Reduce x to Those Elements that Occur in
                        Options
summary.nm              Analyze an NM Object
superset                Augment NONMEM Input with Table Output
supp                    Merge CDISC Supplemental Data
svnIsText               Check Whether Subversioned Files are Text.
svnMarkAsNonText        Mark Subversioned Files as Non-text.
svnMarkAsText           Mark Subversioned Files as Text
svnMimeType             Determine Mime Type for Multiple Files
svnPropGet              Get Subversion Property for a Vector of Files
svnPropGetFile          Get Subversion Property for a Single File
svnPropSet              Set a Property on a Vector of Subversioned
                        Files
svnPropSetFile          Set a Property on a Subversioned File
svnSetMimeType          Set Subversion Mime Type
synthesis               Sequentially Left-join an Arbitrary Number of
                        Data Frames, Picking Up Novel Columns
tabular.data.frame      Convert a Data Frame to a Latex Tabular
                        Environment, Latex Document, or PDF
tabularformat           Create the Format String for Latex Tabular
                        Environment
tagvalue                Convert List to Tag and Value Format
text2decimal            Convert Mixed Text to Decimal
timepoint               Temporal Classes with Selective Defaults
totitle                 Convert Text to Title Case
tweak                   Adjust Values
variants                Locate Variants of a File in Distinctive
                        Subdirectories
wikiparse               Parse Wikimath
win                     Identify Windows Platforms
wrap                    Wrap Text in a Latex Environment
xlog                    Extract Indexed Values from XML
xpath                   Extract Value of an xpath Expression from and
                        XML File
xyplotExt               Plot the Parameter Search History for a NONMEM
                        7 Run
