Entry: BRugs
Aliases: BRugs help.BRugs
Keywords: interface documentation
Description: Introduction to BRugs
URL: ../../../library/BRugs/html/BRugs.html

Entry: BRugsFit
Aliases: BRugsFit
Keywords: interface
Description: BRugs' meta function
URL: ../../../library/BRugs/html/BRugsFit.html

Entry: bgrPoint
Aliases: bgrGrid bgrPoint
Keywords: internal
Description: Internal functions (to support plotting the Gelman-Rubin convergence statistic)
URL: ../../../library/BRugs/html/bgr.point.html

Entry: buffer
Aliases: buffer
Keywords: interface internal
Description: Reading OpenBUGS buffer file
URL: ../../../library/BRugs/html/buffer.html

Entry: bugsData
Aliases: bugsData
Keywords: file
Description: Writing input for OpenBUGS
URL: ../../../library/BRugs/html/bugs.data.html

Entry: bugsInits
Aliases: bugsInits
Keywords: file
Description: Writing input for OpenBUGS
URL: ../../../library/BRugs/html/bugs.inits.html

Entry: buildMCMC
Aliases: buildMCMC
Keywords: interface
Description: Generating mcmc.list objects for package coda
URL: ../../../library/BRugs/html/buildMCMC.html

Entry: currentValues
Aliases: currentValues
Keywords: interface
Description: Last sampled values
URL: ../../../library/BRugs/html/current.values.html

Entry: dic
Aliases: dicStats dicSet dicClear
Keywords: interface
Description: DIC
URL: ../../../library/BRugs/html/dic.html

Entry: dimensions
Aliases: dimensions
Keywords: interface internal
Description: Dimension of BUGS variables
URL: ../../../library/BRugs/html/dimensions.html

Entry: getObj
Aliases: getGraphObj getUpdaterObj
Keywords: interface
Description: Expert functions
URL: ../../../library/BRugs/html/get.Obj.html

Entry: getChain
Aliases: getChain
Keywords: interface internal
Description: Current chain to be initialized
URL: ../../../library/BRugs/html/get.chain.html

Entry: getNumChains
Aliases: getNumChains
Keywords: interface
Description: Number of chains
URL: ../../../library/BRugs/html/get.num.chains.html

Entry: help.WinBUGS
Aliases: help.WinBUGS
Keywords: documentation
Description: WinBUGS documentation
URL: ../../../library/BRugs/html/help.WinBUGS.html

Entry: loadModule
Aliases: loadModule
Keywords: interface
Description: Load a module
URL: ../../../library/BRugs/html/loadModule.html

Entry: modelAdaptivePhase
Aliases: modelAdaptivePhase
Keywords: interface
Description: Getting length of adaptive phase
URL: ../../../library/BRugs/html/model.adaptivePhase.html

Entry: modelCheck
Aliases: modelCheck
Keywords: interface
Description: Checking the model file
URL: ../../../library/BRugs/html/model.check.html

Entry: modelCompile
Aliases: modelCompile
Keywords: interface
Description: Compiling the model
URL: ../../../library/BRugs/html/model.compile.html

Entry: modelData
Aliases: modelData
Keywords: interface
Description: Loading the data
URL: ../../../library/BRugs/html/model.data.html

Entry: modelDynamic
Aliases: modelEnableDynamic modelDisableDynamic
Keywords: interface
Description: Controlling Dynamic Compilation
URL: ../../../library/BRugs/html/model.dynamic.html

Entry: modelFactory
Aliases: modelEnable modelDisable
Keywords: interface
Description: Enable and disable factories to create updaters
URL: ../../../library/BRugs/html/model.factory.html

Entry: modelGenInits
Aliases: modelGenInits
Keywords: interface
Description: Generating initial values
URL: ../../../library/BRugs/html/model.gen.inits.html

Entry: modelInits
Aliases: modelInits
Keywords: interface
Description: Loading initial values
URL: ../../../library/BRugs/html/model.inits.html

Entry: modelIteration
Aliases: modelIteration
Keywords: interface
Description: Returns number of iterations
URL: ../../../library/BRugs/html/model.iteration.html

Entry: modelModules
Aliases: modelModules
Keywords: interface
Description: Loaded modules
URL: ../../../library/BRugs/html/model.modules.html

Entry: modelNames
Aliases: modelNames
Keywords: interface
Description: Get variable names in model
URL: ../../../library/BRugs/html/model.names.html

Entry: modelPrecision
Aliases: modelPrecision
Keywords: interface
Description: Setting precision for prec figures
URL: ../../../library/BRugs/html/model.precision.html

Entry: modelSaveState
Aliases: modelSaveState
Keywords: interface
Description: Save the model's current state
URL: ../../../library/BRugs/html/model.save.state.html

Entry: modelSeed
Aliases: modelSetSeed modelGetSeed
Keywords: interface
Description: Seed of Random Number Generator
URL: ../../../library/BRugs/html/model.seed.html

Entry: modelSetAP
Aliases: modelSetAP modelSetIts modelSetOR
Keywords: interface
Description: Changing settings of updating algorithms
URL: ../../../library/BRugs/html/model.setAP.html

Entry: modelUpdate
Aliases: modelUpdate
Keywords: interface
Description: Updating the model
URL: ../../../library/BRugs/html/model.update.html

Entry: plotAutoC
Aliases: plotAutoC
Keywords: interface hplot
Description: Plot autocorrelation function for a scalar variable
URL: ../../../library/BRugs/html/plot.autoC.html

Entry: plotBgr
Aliases: plotBgr
Keywords: interface hplot
Description: Plot the Gelman-Rubin convergence statistic for a scalar variable
URL: ../../../library/BRugs/html/plot.bgr.html

Entry: plotDensity
Aliases: plotDensity
Keywords: interface hplot
Description: Plot density estimate or histogram of a scalar variable
URL: ../../../library/BRugs/html/plot.density.html

Entry: plotHistory
Aliases: plotHistory
Keywords: interface hplot
Description: Trace of a scalar variable
URL: ../../../library/BRugs/html/plot.history.html

Entry: ranks
Aliases: ranksSet ranksStats ranksClear
Keywords: interface
Description: Calculation of ranks
URL: ../../../library/BRugs/html/ranks.html

Entry: rats
Aliases: ratsdata ratsinits
Keywords: datasets
Description: ratsdata example
URL: ../../../library/BRugs/html/rats.html

Entry: samplesAutoC
Aliases: samplesAutoC
Keywords: interface hplot
Description: Plot autocorrelation function
URL: ../../../library/BRugs/html/samples.autoC.html

Entry: samplesBgr
Aliases: samplesBgr
Keywords: interface hplot
Description: Plot the Gelman-Rubin convergence statistic
URL: ../../../library/BRugs/html/samples.bgr.html

Entry: samplesClear
Aliases: samplesClear
Keywords: interface
Description: Clear recorded values
URL: ../../../library/BRugs/html/samples.clear.html

Entry: samplesCoda
Aliases: samplesCoda
Keywords: interface IO file
Description: Writing files in CODA format
URL: ../../../library/BRugs/html/samples.coda.html

Entry: samplesCorrel
Aliases: samplesCorrel
Keywords: interface univar
Description: Correlation
URL: ../../../library/BRugs/html/samples.correl.html

Entry: samplesDensity
Aliases: samplesDensity
Keywords: interface hplot
Description: Plot density estimate or histogram
URL: ../../../library/BRugs/html/samples.density.html

Entry: samplesGet
Aliases: samplesGetBeg samplesGetEnd samplesGetThin samplesGetLastChain samplesGetFirstChain
Keywords: interface
Description: Get settings used for calculations
URL: ../../../library/BRugs/html/samples.get.html

Entry: samplesHistory
Aliases: samplesHistory
Keywords: interface hplot
Description: Trace of a variable
URL: ../../../library/BRugs/html/samples.history.html

Entry: samplesMonitors
Aliases: samplesMonitors
Keywords: interface
Description: Names of monitored scalar variables
URL: ../../../library/BRugs/html/samples.monitors.html

Entry: samplesSample
Aliases: samplesSample
Keywords: interface
Description: Stored values
URL: ../../../library/BRugs/html/samples.sample.html

Entry: samplesSet
Aliases: samplesSet
Keywords: interface
Description: Start recording
URL: ../../../library/BRugs/html/samples.set.html

Entry: samplesSetting
Aliases: samplesSetBeg samplesSetEnd samplesSetThin samplesSetLastChain samplesSetFirstChain
Keywords: interface
Description: Change settings used for calculations
URL: ../../../library/BRugs/html/samples.setting.html

Entry: samplesSize
Aliases: samplesSize
Keywords: interface
Description: Size of the stored sample
URL: ../../../library/BRugs/html/samples.size.html

Entry: samplesStats
Aliases: samplesStats
Keywords: interface univar
Description: Calculate summary statistics
URL: ../../../library/BRugs/html/samples.stats.html

Entry: setValues
Aliases: setValues
Keywords: interface
Description: Setting current values
URL: ../../../library/BRugs/html/set.values.html

Entry: summary
Aliases: summarySet summaryClear summaryStats
Keywords: interface
Description: Summary of MCMC simulation
URL: ../../../library/BRugs/html/summary.html

Entry: write.datafile
Aliases: write.datafile formatdata
Keywords: internal
Description: Write data for OpenBUGS - intended for internal use only
URL: ../../../library/BRugs/html/write.datafile.html

Entry: writeModel
Aliases: writeModel
Keywords: IO
Description: Creating an OpenBUGS model file
URL: ../../../library/BRugs/html/write.model.html
