Entry: CTFS.internal
Aliases: borderdist fill.dimension fill.1dimension fill.distclasses unidentified.species unwind.matrix rndown5 xydist xydistvect setsize quadslope calcslope
Keywords: internal
Description: internal CTFS functions
URL: ../../../library/CTFS/html/CTFS-internal.html

Entry: CTFS.abundance
Aliases: CTFS.abundance
Keywords: univar
Description: Overview of Analysis of Abundance and Rate of Change in Population Size in Tropical Tree Populations
URL: ../../../library/CTFS/html/CTFS.abundance.html

Entry: CTFS.basalarea
Aliases: CTFS.basalarea
Keywords: univar
Description: Overview of Analysis of the Change in Basal Area of Tropical Tree Populations
URL: ../../../library/CTFS/html/CTFS.basalarea.html

Entry: CTFS.biomass
Aliases: CTFS.biomass
Keywords: univar
Description: Overview of Analysis of the Biomass Dynamics of Tropical Tree Populations
URL: ../../../library/CTFS/html/CTFS.biomass.html

Entry: CTFS.datafiles
Aliases: CTFS.datafiles
Keywords: univar
Description: Overview of Data File Structure for CTFS Package
URL: ../../../library/CTFS/html/CTFS.datafiles.html

Entry: CTFS.densdepend
Aliases: CTFS.densdepend
Keywords: univar
Description: Counting Neighbors and their Attributes - Investigating Density Dependence
URL: ../../../library/CTFS/html/CTFS.densdepend.html

Entry: CTFS.diversity
Aliases: CTFS.diversity
Keywords: univar
Description: Analysis of the number of Species, Genera, and Families in Samples of the Plot
URL: ../../../library/CTFS/html/CTFS.diversity.html

Entry: CTFS.groupcats
Aliases: CTFS.groupcats
Keywords: univar
Description: Overview of Functions that Create Categories for Grouping Trees
URL: ../../../library/CTFS/html/CTFS.groupcats.html

Entry: CTFS.growth
Aliases: CTFS.growth
Keywords: univar
Description: Overview of Analysis of Growth Rates in Tropical Tree Populations
URL: ../../../library/CTFS/html/CTFS.growth.html

Entry: CTFS.main
Aliases: CTFS.main
Keywords: univar
Description: Center for Tropical Forest Science (CTFS) : Analysis of Long Term Forest Plot of Large Size
URL: ../../../library/CTFS/html/CTFS.main.html

Entry: CTFS.manual
Aliases: CTFS.manual
Keywords: manip
Description: CTFS Manuals : Overview
URL: ../../../library/CTFS/html/CTFS.manual.html

Entry: CTFS.maps
Aliases: CTFS.maps
Keywords: hplot
Description: Making Maps of Tree Positions, Topography and Area Characteristics
URL: ../../../library/CTFS/html/CTFS.maps.html

Entry: CTFS.mortality
Aliases: CTFS.mortality
Keywords: univar
Description: Overview of Analysis of Mortality Rates in Tropical Tree Populations
URL: ../../../library/CTFS/html/CTFS.mortality.html

Entry: CTFS.quadfunctions
Aliases: CTFS.quadfunctions
Keywords: univar
Description: Overview of Functions that provide Information on the location of trees in a Plot
URL: ../../../library/CTFS/html/CTFS.quadfunctions.html

Entry: CTFS.readwrite
Aliases: CTFS.readwrite
Keywords: manip
Description: Overview of Functions that Read, Write and Restructure CTFS data files
URL: ../../../library/CTFS/html/CTFS.readwrite.html

Entry: CTFS.recruitment
Aliases: CTFS.recruitment
Keywords: univar
Description: Overview of Analysis of Recruitment Rates in Tropical Tree Populations
URL: ../../../library/CTFS/html/CTFS.recruitment.html

Entry: CTFS.utilities
Aliases: CTFS.utilities
Keywords: manip
Description: Overview of Functions that are CTFS Utilities
URL: ../../../library/CTFS/html/CTFS.utilities.html

Entry: abund.ch.prob
Aliases: abund.ch.prob
Keywords: htest
Description: Calculation of Probability of Change in Population size
URL: ../../../library/CTFS/html/abund.ch.prob.html

Entry: abundance
Aliases: abundance
Keywords: univar
Description: Abundance of Trees by Categories (User Defined Groups)
URL: ../../../library/CTFS/html/abundance.html

Entry: abundance.change
Aliases: abundance.change
Keywords: htest
Description: Annual Change in Population Size by Categories (User Defined Groups
URL: ../../../library/CTFS/html/abundance.change.html

Entry: abundance.change.calculation
Aliases: abundance.change.calculation
Keywords: htest
Description: Calculation of Annual Change in Population Size and Probability that Population Size has Changed
URL: ../../../library/CTFS/html/abundance.change.calculation.html

Entry: abundance.change.dbh
Aliases: abundance.change.dbh
Keywords: univar
Description: Annual Change in Population Size by DBH
URL: ../../../library/CTFS/html/abundance.change.dbh.html

Entry: abundance.quad
Aliases: abundance.quad
Keywords: univar
Description: Abundance of Trees by Species and User Defined Quadrates
URL: ../../../library/CTFS/html/abundance.quad.html

Entry: abundance.spp
Aliases: abundance.spp
Keywords: univar
Description: Abundance of Trees by Species and DBH Classes
URL: ../../../library/CTFS/html/abundance.spp.html

Entry: agb.ind
Aliases: agb.ind agb.mult getwsg.vct
Keywords: univar
Description: Computes Above Growth Biomass for Individual Tree
URL: ../../../library/CTFS/html/agb.ind.html

Entry: assemble.demography
Aliases: assemble.demography
Keywords: manip
Description: Reformat the Output from Demographic Functions from List to Dataframe
URL: ../../../library/CTFS/html/assemble.demography.html

Entry: assemble.table.each
Aliases: assemble.table.each
Keywords: manip
Description: Reformat the Output from Demographic Functions from List to Dataframe
URL: ../../../library/CTFS/html/assemble.table.each.html

Entry: ba
Aliases: ba basum
Keywords: univar
Description: Basal Area of Trees
URL: ../../../library/CTFS/html/ba.html

Entry: ba.change
Aliases: ba.change
Keywords: univar
Description: Annual Change in Basal Area by Categories (User Defined Group)
URL: ../../../library/CTFS/html/ba.change.html

Entry: ba.indiv
Aliases: ba.indiv
Keywords: univar
Description: Basal Area of Individual Trees, including Mulitiple Stems
URL: ../../../library/CTFS/html/ba.indiv.html

Entry: badgrowth.tree
Aliases: badgrowth.tree
Keywords: univar
Description: Identify Trees for which DBH was Estimated for Biomass Calculation
URL: ../../../library/CTFS/html/badgrowth.tree.html

Entry: basal.area
Aliases: basal.area
Keywords: univar
Description: Basal Area by Categories (User defined groups)
URL: ../../../library/CTFS/html/basal.area.html

Entry: bcielev.info
Aliases: bcielev.info
Keywords: datasets
Description: Dataset of elevation for 5 x 5 m points in the BCI CTFS Plot
URL: ../../../library/CTFS/html/bcielev.info.html

Entry: bciquad.info
Aliases: bciquad.info
Keywords: datasets
Description: Dataset of Information for each 20 by 20 m quadrate in the BCI 50 ha plot
URL: ../../../library/CTFS/html/bciquad.info.html

Entry: bcispp.info
Aliases: bcispp.info
Keywords: datasets
Description: Dataset of Information on each Species found in the BCI 50 HA plot
URL: ../../../library/CTFS/html/bcispp.info.html

Entry: bcitopo.info
Aliases: bcitopo.info
Keywords: datasets
Description: Topographic Data for CTFS Plot : Elevation, Convexity and Slope
URL: ../../../library/CTFS/html/bcitopo.info.html

Entry: biomass
Aliases: biomass
Keywords: univar
Description: Compute Above Ground Biomass for Trees for 2 Censuses using Wood Specific Gravity for Species
URL: ../../../library/CTFS/html/biomass.html

Entry: biomass.change
Aliases: biomass.change biomass.change.dbh
Keywords: univar
Description: Biomass Dynamics
URL: ../../../library/CTFS/html/biomass.change.html

Entry: convert.ba.mult
Aliases: convert.ba.mult
Keywords: univar
Description: Compute Basal Area for All Stems of an Individual Tree using Census Dataset and Multi-Stem Dataset
URL: ../../../library/CTFS/html/convert.ba.mult.html

Entry: create.status
Aliases: create.status
Keywords: univar
Description: Create STATUS variable for CTFS Datasets
URL: ../../../library/CTFS/html/create.status.html

Entry: elev.to.list
Aliases: elev.to.list
Keywords: manip
Description: Converts a Dataframe of Elevation Values to a Matrix
URL: ../../../library/CTFS/html/elev.to.list.html

Entry: find.climits
Aliases: find.climits
Keywords: univar
Description: Computes 95\% CI for a Survivorship
URL: ../../../library/CTFS/html/find.climits.html

Entry: findborderquads
Aliases: findborderquads
Keywords: manip
Description: Returns Indices of Neighboring Quadrats Given a Quadrat Index
URL: ../../../library/CTFS/html/findborderquads.html

Entry: gr.raw
Aliases: gr.raw
Keywords: univar
Description: Unadjusted, Untrimmed Annual DBH Increment for Individual Trees
URL: ../../../library/CTFS/html/gr.raw.html

Entry: growth
Aliases: growth
Keywords: univar
Description: Annual Growth Rates by Categories (User defined groups)
URL: ../../../library/CTFS/html/growth.html

Entry: growth.dbh
Aliases: growth.dbh
Keywords: univar
Description: Annual Growth Rate for DBH Classes
URL: ../../../library/CTFS/html/growth.dbh.html

Entry: growth.eachspp
Aliases: growth.eachspp
Keywords: univar
Description: Annual Growth Rate for Species by DBH Class
URL: ../../../library/CTFS/html/growth.eachspp.html

Entry: growth.indiv
Aliases: growth.indiv
Keywords: univar
Description: Annual Growth Rates for Individual Trees (3 methods of growth rate computation provided)
URL: ../../../library/CTFS/html/growth.indiv.html

Entry: gxgy.to.hectindex
Aliases: gxgy.to.hectindex
Keywords: manip
Description: Converts GX GY Coordinates to a Hectare Number
URL: ../../../library/CTFS/html/gxgy.to.hectindex.html

Entry: gxgy.to.index
Aliases: gxgy.to.index
Keywords: manip
Description: Converts GX GY Coordinates to a Quadrate Number
URL: ../../../library/CTFS/html/gxgy.to.index.html

Entry: gxgy.to.rowcol
Aliases: gxgy.to.rowcol
Keywords: manip
Description: Converts a GX GY Coordinates to Row and Column Numbers
URL: ../../../library/CTFS/html/gxgy.to.rowcol.html

Entry: index.to.gxgy
Aliases: index.to.gxgy
Keywords: manip
Description: Converts a Quadrate Number to GX GY Coordinates
URL: ../../../library/CTFS/html/index.to.gxgy.html

Entry: index.to.rowcol
Aliases: index.to.rowcol
Keywords: manip
Description: Converts a Quadrate Number (Indext) to Row and Column Numbers
URL: ../../../library/CTFS/html/index.to.rowcol.html

Entry: map
Aliases: map map1species
Keywords: hplot
Description: Plot of the Spatial Location of Trees of a Species
URL: ../../../library/CTFS/html/map.html

Entry: maptopo
Aliases: maptopo
Keywords: hplot
Description: Plot a Contour Map of Topography of a CTFS Plot
URL: ../../../library/CTFS/html/maptopo.html

Entry: meaninterval.quad
Aliases: meaninterval.quad
Keywords: univar
Description: Mean Interval Between Census for Quadrates
URL: ../../../library/CTFS/html/meaninterval.quad.html

Entry: meantopo.quad
Aliases: meantopo.quad
Keywords: univar
Description: Mean Topographic Values for Quadrates
URL: ../../../library/CTFS/html/meantopo.quad.html

Entry: mergecensus
Aliases: mergecensus
Keywords: manip
Description: Merging Two Censuses of CTFS Plot Data
URL: ../../../library/CTFS/html/mergecensus.html

Entry: mortality
Aliases: mortality
Keywords: univar
Description: Annual Mortality Rates by Categories (User defined groups)
URL: ../../../library/CTFS/html/mortality.html

Entry: mortality.calculation
Aliases: mortality.calculation
Keywords: univar
Description: Compute Annual Mortality Rates and Confidence Limits given N, S and Time
URL: ../../../library/CTFS/html/mortality.calculation.html

Entry: mortality.dbh
Aliases: mortality.dbh
Keywords: univar
Description: Annual Mortality Rates for DBH Classes
URL: ../../../library/CTFS/html/mortality.dbh.html

Entry: mortality.eachspp
Aliases: mortality.eachspp
Keywords: univar
Description: Annual Mortality Rate for Species by DBH Class
URL: ../../../library/CTFS/html/mortality.eachspp.html

Entry: neighbordens.1sp
Aliases: neighbordens.1sp neighbordens.1quad countdens.1quad countdens.1tree
Keywords: univar
Description: Create File of Neighbor Attributes for a Single Species
URL: ../../../library/CTFS/html/neighbordens.1sp.html

Entry: pick.dbh
Aliases: pick.dbh
Keywords: univar
Description: Determine the Appropriate DBH to Use for Computation of Above Ground Biomass
URL: ../../../library/CTFS/html/pick.dbh.html

Entry: readelevdata
Aliases: readelevdata
Keywords: manip
Description: Read a Text or RData Dataframe and Make a Matrix, Specifically for Elevation Data
URL: ../../../library/CTFS/html/readelevdata.html

Entry: recruitment
Aliases: recruitment
Keywords: univar
Description: Annual Recruitment Rate by Categories (User defined groups)
URL: ../../../library/CTFS/html/recruitment.html

Entry: recruitment.calculation
Aliases: recruitment.calculation
Keywords: univar
Description: Compute Annual Recruitment Rates and Confidence Limits given N, S and Time
URL: ../../../library/CTFS/html/recruitment.calculation.html

Entry: recruitment.eachspp
Aliases: recruitment.eachspp
Keywords: univar
Description: Annual Recruitment Rate for Species
URL: ../../../library/CTFS/html/recruitment.eachspp.html

Entry: rowcol.to.index
Aliases: rowcol.to.index
Keywords: manip
Description: Converts a Row and Column to a Quadrate Number
URL: ../../../library/CTFS/html/rowcol.to.index.html

Entry: select.randquad
Aliases: select.randquad
Keywords: univar
Description: Randomly Select the Coordinates of Quadrate
URL: ../../../library/CTFS/html/select.randquad.html

Entry: sep.data
Aliases: sep.data sep.vct.data
Keywords: manip
Description: Re-structures a Dataframe into a List of Dataframes by Values in a Vector
URL: ../../../library/CTFS/html/sep.data.html

Entry: sep.dbh
Aliases: sep.dbh
Keywords: manip
Description: Creates a Vector of DBH Classes for each Tree in a Dataset
URL: ../../../library/CTFS/html/sep.dbh.html

Entry: sep.quadinfo
Aliases: sep.quadinfo
Keywords: manip
Description: Creates a Vector of Quadrate Characteristics for each Tree in a Dataset
URL: ../../../library/CTFS/html/sep.quadinfo.html

Entry: sep.species
Aliases: sep.species load.species
Keywords: manip
Description: Separate One or More Dataframes of Tree Records from a List
URL: ../../../library/CTFS/html/sep.species.html

Entry: sep.sppinfo
Aliases: sep.sppinfo
Keywords: manip
Description: Creates a Vector of Species Characteristics for each Tree in a Dataset
URL: ../../../library/CTFS/html/sep.sppinfo.html

Entry: sgf.area
Aliases: sgf.area
Keywords: univar
Description: Number of Species, Genera and Families for a single defined Area
URL: ../../../library/CTFS/html/sgf.area.html

Entry: sgf.meanarea
Aliases: sgf.meanarea
Keywords: univar
Description: Mean Number of Species, Genera and Families for Replicates of Randomly Selected Areas
URL: ../../../library/CTFS/html/sgf.meanarea.html

Entry: sgf.meanarea.range
Aliases: sgf.meanarea.range
Keywords: univar
Description: Mean Number of Species, Genera and Families for Replicates of Randomly Selected Areas of a Given Range of Area Sizes and Shapes
URL: ../../../library/CTFS/html/sgf.meanarea.range.html

Entry: sgf.randarea
Aliases: sgf.randarea
Keywords: univar
Description: Number of Species, Genera and Families for Randomly Selected Area
URL: ../../../library/CTFS/html/sgf.randarea.html

Entry: socrex90.neigh
Aliases: socrex90.neigh
Keywords: datasets
Description: Structure of Datasets for Density Dependence Analysis
URL: ../../../library/CTFS/html/socrex90.neigh.html

Entry: splitdata
Aliases: splitdata
Keywords: manip
Description: Re-structures a Dataframe into a List of Dataframes by values of a Column in the Dataframe
URL: ../../../library/CTFS/html/splitdata.html

Entry: spp.randarea.range
Aliases: spp.randarea.range
Keywords: univar
Description: Number of Species in Randomly Selected Areas of Various Shapes and Sizes
URL: ../../../library/CTFS/html/spp.randarea.range.html

Entry: texttordata
Aliases: texttordata
Keywords: manip
Description: Creates CTFS R dataset from any tab delimited text file
URL: ../../../library/CTFS/html/texttordata.html

Entry: tojulian
Aliases: tojulian fromjulian
Keywords: manip
Description: Converts Calendar Dates to Julian Dates and Back
URL: ../../../library/CTFS/html/tojulian.html

Entry: trim.growth
Aliases: trim.growth
Keywords: univar
Description: Determines if the Growth Rate of a Tree is Within Defined Limits
URL: ../../../library/CTFS/html/trim.growth.html

Entry: tst.bci90.full
Aliases: tst.bci90.full tst.bci95.full tst.bci90.spp tst.bci95.spp tst.bci90.quad tst.bci95.quad
Keywords: datasets
Description: Structure of CTFS Long Term Forest Data Set for a Single Census
URL: ../../../library/CTFS/html/tst.bci90.full.html

Entry: tst.bci90.mult
Aliases: tst.bci95.mult tst.bci90.mult
Keywords: datasets
Description: Structure of the CTFS Long Term Forest Data Set Multiple Stem dataset for a single census
URL: ../../../library/CTFS/html/tst.bci90.mult.html

Entry: tst.ctfs.wsg
Aliases: tst.ctfs.wsg
Keywords: datasets
Description: Wood Specific Gravity for Tropical Tree Species
URL: ../../../library/CTFS/html/tst.ctfs.wsg.html
