# Soil Physics Tools

## Documentation for package `SoPhy' version 1.0.28

## Help Pages

ADE | Advection-dispersion equation
analyse.profile | Analysis of a flow pattern in soil
belichtet | Perspective plot
BrilliantBlue | Brilliant Blue tracer profile
brilliantblue | Brilliant Blue tracer profile
calculate.horizons | Update of the horizon structure
CDE | Advection-dispersion equation
create.roots | Simulation of roots
create.stones | Simulation of stones
create.waterflow | Preparation for swms2d
dpareto | The Pareto Distribution
draw.horizons | Draw of the profile of horizons
F04 | Brilliant Blue tracer profile
F06 | Brilliant Blue tracer profile
flowpattern | Simulation of flow pattern
K06 | Brilliant Blue tracer profile
modify.horizons | Stochastic variation of the definitions of the horizons
my.legend | legend for a spectrum of colours
Pareto | The Pareto Distribution
pareto | The Pareto Distribution
plotFlow2d | plotting of the simulated infiltration pattern
plotFlow3d | plotting of the simulated infiltration pattern
plotRF | Plotting random fields
plotRGB | Plotting RGB figures
plotWater | Plotting the result of SWMS2D
pos3D | Perspective plot
ppareto | The Pareto Distribution
qpareto | The Pareto Distribution
quader | Perspective plot
read.picture | Reading TIF pictures and conversion to RGB matrix
read.swms2d.table | Standard SWMS2D input files
risk.index | Risk index for soil leaching
rpareto | The Pareto Distribution
sh.jch | Sample code
sh.jh | Sample code
simulateHorizons | Simulation of the stochastic part of the definition of the horizons
SoilPhysics | Soil physics tools
SOPHY | Soil physics tools
SoPhy | Soil physics tools
sophy | Modelling of water flux and solute transport
SWMS2D | SWMS2D function call
swms2d | SWMS2D function call
tortuosity | Variability of the tortuosity
tracer | Brilliant Blue tracer profile
write.picture | RGB to TIF
xswms2d | Modelling of water flux and solute transport