crohn                  package:gap                  R Documentation

_C_r_o_h_n _d_i_s_e_a_s_e _d_a_t_a

_D_e_s_c_r_i_p_t_i_o_n:

     The data set consist of 103 common (>5% minor allele frequency)
     SNPs  genotyped in 129 trios from an European-derived population.
     These  SNPs are in a 500-kb region on human chromosome 5q31
     implicated as  containing a genetic risk factor for Crohn disease.

     The positions, names and haplotype blocks reported are as follows,


     274044   IGR1118a_1     BLOCK 1
     274541   IGR1119a_1     *
     286593   IGR1143a_1     *
     287261   IGR1144a_1     *
     299755   IGR1169a_2     *
     324341   IGR1218a_2     *
     324379   IGR1219a_2     *
     358048   IGR1286a_1     BLOCK 1
     366811   TSC0101718
     395079   IGR1373a_1     BLOCK 2
     396353   IGR1371a_1     *
     397334   IGR1369a_2     *
     397381   IGR1369a_1     *
     398352   IGR1367a_1     BLOCK 2
     411823   IGR2008a_2
     411873   IGR2008a_1     BLOCK 3
     412456   IGR2010a_3     *
     413233   IGR2011b_1     *
     415579   IGR2016a_1     *
     417617   IGR2020a_15    *
     419845   IGR2025a_2     *
     424283   IGR2033a_1     *
     425376   IGR2036a_2     *
     425549   IGR2036a_1     BLOCK 3
     433467   IGR2052a_1     BLOCK 4
     435282   IGR2055a_1     *
     437682   IGR2060a_1     *
     438883   IGR2063b_1     *
     443565   IGR2072a_2     *
     443750   IGR2073a_1     *
     445337   IGR2076a_1     *
     447791   IGR2081a_1     *
     449895   IGR2085a_2     *
     455246   IGR2096a_1     *
     463136   IGR2111a_3     BLOCK 4
     482171   IGR2150a_1     BLOCK 5
     485828   IGR2157a_1     *
     495082   IGR2175a_2     *
     506266   IGR2198a_1     *
     506890   IGR2199a_1     BLOCK 5
     507208   IGR2200a_1     BLOCK 6
     508338   IGR2202a_1     *
     508858   IGR2203a_1     *
     510951   IGR2207a_1     *
     518478   IGR2222a_2     BLOCK 6
     519387   IGR2224a_2     BLOCK 7
     519962   IGR2225a_1     *
     520521   IGR2226a_3     *
     522600   IGR2230a_1     *
     525243   IGR2236a_1     *       
     529556   IGR2244a_4     *
     532363   IGR2250a_4     *
     545062   IGR2276a_1     *
     553189   IGR2292a_1     *
     570978   IGR3005a_1     *
     571022   IGR3005a_2     *
     576586   IGR3016a_1     *
     577141   IGR3018a_2     *
     577838   IGR3019a_2     *
     578122   IGR3020a_1     *
     579217   IGR3022a_1     *
     579529   IGR3023a_1     *
     579818   IGR3023a_3     *
     582651   IGR3029a_1     *
     582948   IGR3029a_2     *
     583131   IGR3030a_1     *
     587836   IGR3039a_1     *
     590425   IGR3044a_1     *
     590585   IGR3045a_1     *
     594115   IGR3051a_1     *
     594812   IGR3053a_1     *
     598805   IGR3061a_1     *
     601294   IGR3066a_1     *
     608759   IGR3081a_1     *
     610447   IGR3084a_1     *
     611177   IGR3086a_1     BLOCK 7
     613488   IGR3090a_1
     616241   IGR3096a_1     BLOCK 8
     616763   IGR3097a_1     *
     617299   IGR3098a_1     *
     626881   IGR3117a_1     *
     633786   IGR3131a_1     *
     635072   IGR3134a_1     *
     637441   IGR3138a_1     BLOCK 8
     648564   IGR3161a_1
     649061   IGR3162a_1     BLOCK 9
     649903   IGR3163a_1     *
     657234   IGR3178a_1     *
     662077   IGR3188a_1     *
     662819   IGR3189a_2     *
     676688   IGRX100a_1     BLOCK 9
     683387   IGR3230a_1     BLOCK 10
     686249   IGR3236a_1     *
     692320   IGR3248a_1     *
     718291   IGR3300a_2     *
     730313   IGR3324a_1     *
     731025   IGR3326a_1     *
     738461   IGR3340a_1     BLOCK 10
     871978   GENS021ex1_2   BLOCK 11
     877571   GENS020ex3_3   *
     877671   GENS020ex3_2   *
     877809   GENS020ex3_1   *
     890710   GENS020ex1_1   BLOCK 11

     However it has been updated after the paper was published (posted
     on <URL: http://www.broad.mit.edu/humgen/IBD5/haplodata.html>)

_U_s_a_g_e:

     data(crohn)

_F_o_r_m_a_t:

     A data frame containing 387 rows and 212 columns

_S_o_u_r_c_e:

     MJ Daly, JD Rioux, SF Schaffner, TJ Hudson, ES Lander (2001) 
     High-resolution haplotype structure in the human genome Nature 
     Genetics 29:229-232

