Entry: aldh2
Aliases: aldh2
Keywords: datasets
Description: ALDH2 markers and Alcoholism
URL: ../../../library/gap/html/aldh2.html

Entry: apoeapoc
Aliases: apoeapoc
Keywords: datasets
Description: APOE/APOC1 markers and Schizophrenia
URL: ../../../library/gap/html/apoeapoc.html

Entry: bt
Aliases: bt
Keywords: models
Description: Bradley-Terry model for contingency table
URL: ../../../library/gap/html/bt.html

Entry: ccsize
Aliases: ccsize
Keywords: misc
Description: Power and sample size for case-cohort design
URL: ../../../library/gap/html/ccsize.html

Entry: cf
Aliases: cf
Keywords: datasets
Description: Cystic Fibrosis data
URL: ../../../library/gap/html/cf.html

Entry: chow.test
Aliases: chow.test
Keywords: htest
Description: Chow's test for heterogeneity in two regressions
URL: ../../../library/gap/html/chow.test.html

Entry: crohn
Aliases: crohn
Keywords: datasets
Description: Crohn disease data
URL: ../../../library/gap/html/crohn.html

Entry: fa
Aliases: fa
Keywords: datasets
Description: Friedreich Ataxia data
URL: ../../../library/gap/html/fa.html

Entry: fbsize
Aliases: fbsize
Keywords: models
Description: Sample size for family-based linkage and association design
URL: ../../../library/gap/html/fbsize.html

Entry: fsnps
Aliases: fsnps
Keywords: datasets
Description: A case-control data involving four SNPs with missing genotype
URL: ../../../library/gap/html/fsnps.html

Entry: gap-internal
Aliases: Ginv a2g allele.recode compositeLD g2a g2a.c geno.recode gc.control gcode grec2g hap.control hap.score.glm hap.score.podds is.miss m2plem plem2m printBanner print.compositeLD revhap revhap.i toETDT ungcode
Keywords: internal
Description: internal functions for gap
URL: ../../../library/gap/html/gap-internal.html

Entry: gc.em
Aliases: gc.em
Keywords: models
Description: Gene counting for haplotype analysis
URL: ../../../library/gap/html/gc.em.html

Entry: gcontrol
Aliases: gcontrol
Keywords: models
Description: genomic control
URL: ../../../library/gap/html/gcontrol.html

Entry: gcp
Aliases: gcp pm pmplus
Keywords: models
Description: Permutation tests using GENECOUNTING
URL: ../../../library/gap/html/gcp.html

Entry: genecounting
Aliases: genecounting
Keywords: models
Description: Gene counting for haplotype analysis
URL: ../../../library/gap/html/genecounting.html

Entry: gif
Aliases: gif
Keywords: datagen
Description: Kinship coefficient and genetic index of familiality
URL: ../../../library/gap/html/gif.html

Entry: hap
Aliases: hap
Keywords: models
Description: Haplotype reconstruction
URL: ../../../library/gap/html/hap.html

Entry: hap.em
Aliases: hap.em
Keywords: models
Description: Gene counting for haplotype analysis
URL: ../../../library/gap/html/hap.em.html

Entry: hap.score
Aliases: hap.score
Keywords: models
Description: Score statistics for association of traits with haplotypes
URL: ../../../library/gap/html/hap.score.html

Entry: hla
Aliases: hla
Keywords: datasets
Description: The HLA data
URL: ../../../library/gap/html/hla.html

Entry: htr
Aliases: htr
Keywords: regression
Description: Haplotype trend regression
URL: ../../../library/gap/html/htr.html

Entry: hwe
Aliases: hwe
Keywords: htest
Description: Hardy-Weinberg equlibrium test for multiallelic marker
URL: ../../../library/gap/html/hwe.html

Entry: hwe.hardy
Aliases: hwe.hardy
Keywords: htest
Description: Hardy-Weinberg equilibrium test using MCMC
URL: ../../../library/gap/html/hwe.hardy.html

Entry: kbyl
Aliases: kbyl
Keywords: models
Description: LD statistics for two multiallelic loci
URL: ../../../library/gap/html/kbyl.html

Entry: kin.morgan
Aliases: kin.morgan
Keywords: datagen
Description: kinship matrix for simple pedigree
URL: ../../../library/gap/html/kin.morgan.html

Entry: makeped
Aliases: makeped
Keywords: datagen
Description: A function to prepare pedigrees in post-MAKEPED format
URL: ../../../library/gap/html/makeped.html

Entry: mao
Aliases: mao
Keywords: datasets
Description: A study of Parkinson's disease and MAO gene
URL: ../../../library/gap/html/mao.html

Entry: mia
Aliases: mia
Keywords: utilities
Description: multiple imputation analysis for hap
URL: ../../../library/gap/html/mia.html

Entry: mtdt
Aliases: mtdt
Keywords: models
Description: Transmission/disequilibrium test of a multiallelic marker
URL: ../../../library/gap/html/mtdt.html

Entry: muvar
Aliases: muvar
Keywords: models
Description: Means and variances under 1- and 2- locus (biallelic) QTL model
URL: ../../../library/gap/html/muvar.html

Entry: nep499
Aliases: nep499
Keywords: datasets
Description: A study of Alzheimer's disease with eight SNPs and APOE
URL: ../../../library/gap/html/nep499.html

Entry: pbsize
Aliases: pbsize
Keywords: models
Description: Power for population-based association design
URL: ../../../library/gap/html/pbsize.html

Entry: pedtodot
Aliases: pedtodot
Keywords: dplot
Description: Converting pedigree(s) to dot file(s)
URL: ../../../library/gap/html/pedtodot.html

Entry: pfc
Aliases: pfc
Keywords: models
Description: Probability of familial clustering of disease
URL: ../../../library/gap/html/pfc.html

Entry: pfc.sim
Aliases: pfc.sim
Keywords: models
Description: Probability of familial clustering of disease
URL: ../../../library/gap/html/pfc.sim.html

Entry: pgc
Aliases: pgc
Keywords: models
Description: Preparing weight for GENECOUNTING
URL: ../../../library/gap/html/pgc.html

Entry: plot.hap.score
Aliases: plot.hap.score
Keywords: misc
Description: Plot Haplotype Frequencies versus Haplotype Score Statistics
URL: ../../../library/gap/html/plot.hap.score.html

Entry: print.hap.score
Aliases: print.hap.score
Keywords: print
Description: Print a hap.score object
URL: ../../../library/gap/html/print.hap.score.html

Entry: s2k
Aliases: s2k
Keywords: models
Description: Statistics for 2 by K table
URL: ../../../library/gap/html/s2k.html

Entry: snca
Aliases: snca
Keywords: datasets
Description: A study of Parkinson's disease and SNCA makers
URL: ../../../library/gap/html/snca.html

Entry: tbyt
Aliases: tbyt
Keywords: models
Description: LD statistics for two SNPs
URL: ../../../library/gap/html/tbyt.html

Entry: twinan90
Aliases: twinan90
Keywords: models
Description: Classic twin models
URL: ../../../library/gap/html/twinan90.html

Entry: whscore
Aliases: whscore
Keywords: utilities
Description: Whittemore-Halpern scores for allele-sharing
URL: ../../../library/gap/html/whscore.html
