Entry: HWE.chisq
Aliases: HWE.chisq HWE.chisq.genotype
Keywords: misc
Description: Perform Chi-Square Test for Hardy-Weinberg Equilibrium
URL: ../../../library/genetics/html/HWE.chisq.html

Entry: HWE.exact
Aliases: HWE.exact
Keywords: misc
Description: Exact Test of Hardy-Weinberg Equilibrium for 2-Allele Markers
URL: ../../../library/genetics/html/HWE.exact.html

Entry: HWE.test
Aliases: HWE.test HWE.test.genotype HWE.test.data.frame print.HWE.test
Keywords: misc
Description: Estimate Disequilibrium and Test for Hardy-Weinberg Equilibrium
URL: ../../../library/genetics/html/HWE.test.html

Entry: LD
Aliases: LD LD.genotype LD.data.frame
Keywords: misc
Description: Pairwise linkage disequilibrium between genetic markers.
URL: ../../../library/genetics/html/LD.html

Entry: binsearch
Aliases: binsearch
Keywords: optimize programming
Description: Binary Search
URL: ../../../library/genetics/html/binsearch.html

Entry: ci.balance
Aliases: ci.balance
Keywords: misc
Description: Experimental Function to Correct Confidence Intervals At or Near Boundaries of the Parameter Space by 'Sliding' the Interval on the Quantile Scale.
URL: ../../../library/genetics/html/ci.balance.html

Entry: diseq
Aliases: diseq diseq.table diseq.genotype diseq.ci print.diseq
Keywords: misc
Description: Estimate or Compute Confidence Interval for the Single-Marker Disequilibrium
URL: ../../../library/genetics/html/diseq.html

Entry: expectedGenotypes
Aliases: expectedGenotypes
Keywords: manip
Description: Construct expected genotypes according to known allele variants
URL: ../../../library/genetics/html/expectedGenotypes.html

Entry: genotype
Aliases: genotype haplotype is.genotype is.haplotype as.genotype as.haplotype print.genotype ==.genotype ==.haplotype [.genotype [.haplotype [<-.genotype [<-.haplotype heterozygote.genotype homozygote.genotype print.allele.count print.allele.genotype allele.count.genotype as.genotype.allele.count as.genotype.character as.genotype.default as.genotype.factor as.genotype.genotype as.genotype.haplotype as.genotype.table nallele
Keywords: misc
Description: Genotype or Haplotype Objects.
URL: ../../../library/genetics/html/genotype.html

Entry: gregorius
Aliases: gregorius
Keywords: misc
Description: Probability of Observing All Alleles with a Given Frequency in a Sample of a Specified Size.
URL: ../../../library/genetics/html/gregorius.html

Entry: homozygote
Aliases: homozygote heterozygote carrier carrier.genotype allele allele.count allele.names
Keywords: misc
Description: Extract Features of Genotype objects
URL: ../../../library/genetics/html/homozygote.html

Entry: locus
Aliases: locus gene marker is.gene is.locus is.marker print.gene print.locus print.marker as.character.locus as.character.gene as.character.marker getlocus getmarker getgene locus<- marker<- gene<-
Keywords: misc
Description: Create and Manipulate Locus, Gene, and Marker Objects
URL: ../../../library/genetics/html/locus.html

Entry: makeGenotypes
Aliases: makeGenotypes makeHaplotypes
Keywords: misc
Description: Convert columns in a dataframe to genotypes or haplotypes
URL: ../../../library/genetics/html/makeGenotypes.html

Entry: plot.genotype
Aliases: plot.genotype
Keywords: hplot
Description: Plot genotype object
URL: ../../../library/genetics/html/plot.genotype.html

Entry: power.casectrl
Aliases: power.casectrl
Keywords: design
Description: Power for case-control genetics study
URL: ../../../library/genetics/html/power.casectl.html

Entry: print.LD
Aliases: print.LD print.LD.data.frame summary.LD.data.frame print.summary.LD.data.frame plot.LD.data.frame LDtable LDplot
Keywords: misc
Description: Textual and graphical display of linkage disequilibrium (LD) objects
URL: ../../../library/genetics/html/print.LD.html

Entry: summary.genotype
Aliases: summary.genotype print.summary.genotype
Keywords: misc
Description: Allele and Genotype Frequency from a Genotype or Haplotype Object
URL: ../../../library/genetics/html/summary.genotype.html

Entry: undocumented
Aliases: as.factor allele.count.2.genotype as.factor.allele.genotype as.factor.default as.factor.genotype shortsummary.genotype geno.as.array mknum hap hapshuffle hapenum hapfreq hapmcmc mourant hapambig
Keywords: misc
Description: Undocumented functions
URL: ../../../library/genetics/html/undocumented.html

Entry: write.pop.file
Aliases: write.pop.file write.pedigree.file write.marker.file
Keywords: IO
Description: Create genetics data files
URL: ../../../library/genetics/html/write.pop.file.html
