resiplot {maanova} | R Documentation

## Residual plot for Micro Array Experiment

### Description

This is the function to plot the residuals versus fitted value figure. Two channels, e.g., red and green, are drawn in seperate figures.

### Usage

    resiplot(madata, anovaobj, header)

### Arguments

`madata` | An object of class `madata`.
`anovaobj` | An object of class `maanova`, which is the output from `fitmaanova`.
`header` | Optional. The title of the figure. The default figure title will be "Residual vs. Yhat plot".

### Author(s)

Hao Wu hao@jax.org

### Examples

    # load in Paigen's data
    data(paigen)
    # make data object with rep 2
    paigen <- createData(paigen.raw, 2)
    # Note that the data is normalized so normalization is skipped
    # full model
    model.full.fix <- makeModel(data=paigen,
          formula=~Dye+Array+Spot+Strain+Diet+Strain:Diet)
    anova.full.fix <- fitmaanova(paigen, model.full.fix)
    # residual plot
    resiplot(paigen, anova.full.fix)

[Package maanova version 0.98.8 Index]