# Tools for analyzing Micro Array experiments

## Documentation for package `maanova' version 0.98.8

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

abf1 | Data for a 18-array affymetrix experiment
adjPval | Generate FDR adjusted P values for F test result.
arrayview | View the layout of input data
consensus | Build consensus tree out of bootstrap cluster result
createData | Calculate and create a data object for Micro Array experiment
dyeswapfilter | Gene filter for dye-swap experiment
exprSet2Rawdata | Convert an object of exprSet to an object of Rawdata
fill.missing | Fill in missing data
fitmaanova | Fit ANOVA model for Micro Array experiment
fom | Figure of Merit
geneprofile | Expression plot for selected genes
gridcheck | Plot grid-by-grid data comparison for arrays
kidney | Kidney Data from CAMDA
macluster | Clustering analysis for Micro Array experiment
makeModel | Make model object for N-dye Micro Array experiment
matest | Statistical test for Microarray experiment
paigen | Data for a multiple factor 28-array expeirment
read.madata | Read Micro Array data from TAB delimited simple text file
resiplot | Residual plot for Micro Array Experiment
riplot | Ratio intensity plot for 2-dye Micro Array experiment
Rmaanova.version | Display the current version of the package
subset.madata | Subsetting Micro Array data objects
transform.madata | Micro Array experiment data transformation
transform.rawdata | Micro Array experiment data transformation
varplot | Variance component plot
volcano | Volcano plot for F test results
write.madata | Write Micro Array data to a TAB delimited simple text file