Entry: MatrixExp
Aliases: MatrixExp
Keywords: math
Description: Matrix exponential
URL: ../../../library/msm/html/MatrixExp.html

Entry: aneur
Aliases: aneur
Keywords: datasets
Description: Aortic aneurysm progression data
URL: ../../../library/msm/html/aneur.html

Entry: bos
Aliases: bos
Keywords: datasets
Description: Bronchiolitis obliterans syndrome after lung transplants
URL: ../../../library/msm/html/bos.html

Entry: coef.msm
Aliases: coef.msm
Keywords: models
Description: Extract model coefficients
URL: ../../../library/msm/html/coef.msm.html

Entry: crudeinits.msm
Aliases: crudeinits.msm
Keywords: 
Description: Calculate crude initial values for transition intensities
URL: ../../../library/msm/html/crudeinits.msm.html

Entry: deltamethod
Aliases: deltamethod
Keywords: math
Description: The delta method
URL: ../../../library/msm/html/deltamethod.html

Entry: ematrix.msm
Aliases: ematrix.msm
Keywords: models
Description: Misclassification probability matrix
URL: ../../../library/msm/html/ematrix.msm.html

Entry: fev
Aliases: fev
Keywords: datasets
Description: FEV1 measurements from lung transplant recipients
URL: ../../../library/msm/html/fev.html

Entry: hazard.msm
Aliases: hazard.msm
Keywords: models
Description: Calculate tables of hazard ratios for covariates on transition intensities
URL: ../../../library/msm/html/hazard.msm.html

Entry: heart
Aliases: heart
Keywords: datasets
Description: Heart transplant monitoring data
URL: ../../../library/msm/html/heart.html

Entry: hmm-dists
Aliases: hmm-dists hmmCat hmmIdent hmmUnif hmmNorm hmmLNorm hmmExp hmmGamma hmmWeibull hmmPois hmmBinom hmmTNorm hmmMETNorm hmmMEUnif hmmNBinom
Keywords: 
Description: Hidden Markov model constructors
URL: ../../../library/msm/html/hmm-dists.html

Entry: logLik.msm
Aliases: logLik.msm
Keywords: models
Description: Extract model log-likelihood
URL: ../../../library/msm/html/logLik.msm.html

Entry: medists
Aliases: medists dmenorm pmenorm qmenorm rmenorm dmeunif pmeunif qmeunif rmeunif
Keywords: 
Description: Measurement error distributions
URL: ../../../library/msm/html/medists.html

Entry: msm
Aliases: msm
Keywords: models
Description: Multi-state Markov and hidden Markov models in continuous time
URL: ../../../library/msm/html/msm.html

Entry: odds.msm
Aliases: odds.msm
Keywords: models
Description: Calculate tables of odds ratios for covariates on misclassification probabilities
URL: ../../../library/msm/html/odds.msm.html

Entry: pexp
Aliases: pexp dpexp ppexp qpexp rpexp
Keywords: 
Description: Exponential distribution with piecewise-constant rate
URL: ../../../library/msm/html/pexp.html

Entry: plot.msm
Aliases: plot.msm
Keywords: models
Description: Plots of multi-state models
URL: ../../../library/msm/html/plot.msm.html

Entry: pmatrix.msm
Aliases: pmatrix.msm
Keywords: 
Description: Transition probability matrix
URL: ../../../library/msm/html/pmatrix.msm.html

Entry: pmatrix.piecewise.msm
Aliases: pmatrix.piecewise.msm
Keywords: 
Description: Transition probability matrix for processes with piecewise-constant intensities
URL: ../../../library/msm/html/pmatrix.piecewise.msm.html

Entry: prevalence.msm
Aliases: prevalence.msm
Keywords: models
Description: Tables of observed and expected prevalences
URL: ../../../library/msm/html/prevalence.msm.html

Entry: psor
Aliases: psor
Keywords: datasets
Description: Psoriatic arthritis data
URL: ../../../library/msm/html/psor.html

Entry: qmatrix.msm
Aliases: qmatrix.msm
Keywords: models
Description: Transition intensity matrix
URL: ../../../library/msm/html/qmatrix.msm.html

Entry: qratio.msm
Aliases: qratio.msm
Keywords: models
Description: Estimated ratio of transition intensities
URL: ../../../library/msm/html/qratio.msm.html

Entry: sim.msm
Aliases: sim.msm
Keywords: models
Description: Simulate one individual trajectory from a continuous-time Markov model
URL: ../../../library/msm/html/sim.msm.html

Entry: simmulti.msm
Aliases: simmulti.msm
Keywords: models
Description: Simulate multiple trajectories from a multi-state Markov model with arbitrary observation times
URL: ../../../library/msm/html/simmulti.msm.html

Entry: sojourn.msm
Aliases: sojourn.msm
Keywords: models
Description: Mean sojourn times from a multi-state model
URL: ../../../library/msm/html/sojourn.msm.html

Entry: statetable.msm
Aliases: statetable.msm
Keywords: 
Description: Table of transitions
URL: ../../../library/msm/html/statetable.msm.html

Entry: msm.summary
Aliases: summary.msm print.summary.msm
Keywords: 
Description: Summarise a fitted multi-state model
URL: ../../../library/msm/html/summary.msm.html

Entry: surface.msm
Aliases: surface.msm persp.msm contour.msm image.msm
Keywords: models
Description: Explore the likelihood surface
URL: ../../../library/msm/html/surface.msm.html

Entry: tnorm
Aliases: tnorm dtnorm ptnorm qtnorm rtnorm
Keywords: 
Description: Truncated Normal distribution
URL: ../../../library/msm/html/tnorm.html

Entry: totlos.msm
Aliases: totlos.msm
Keywords: 
Description: Total length of stay
URL: ../../../library/msm/html/totlos.msm.html

Entry: transient.msm
Aliases: transient.msm absorbing.msm
Keywords: 
Description: Transient and absorbing states
URL: ../../../library/msm/html/transient.msm.html

Entry: viterbi.msm
Aliases: viterbi.msm
Keywords: models
Description: Calculate the most likely path through underlying stages
URL: ../../../library/msm/html/viterbi.msm.html
