# PLS analyses for genomics

## Documentation for package `plsgenomics' version 1.2

## Help Pages

Colon | Gene expression data from Alon et al. (1999)
Ecoli | Ecoli gene expression and connectivity data from Kao et al. (2003)
gsim | GSIM for binary data
gsim.cv | Determination of the ridge regularization parameter and the bandwidth to be used for classification with GSIM for binary data
leukemia | Gene expression data from Golub et al. (1999)
mgsim | GSIM for categorical data
mgsim.cv | Determination of the ridge regularization parameter and the bandwidth to be used for classification with GSIM for categorical data
mrpls | Ridge Partial Least Square for categorical data
mrpls.cv | Determination of the ridge regularization parameter and the number of PLS components to be used for classification with RPLS for categorical data
pls.lda | Classification with PLS Dimension Reduction and Linear Discriminant Analysis
pls.lda.cv | Determination of the number of latent components to be used for classification with PLS and LDA
pls.regression | Multivariate Partial Least Squares Regression
pls.regression.cv | Determination of the number of latent components to be used in PLS regression
preprocess | preprocess for microarray data
rpls | Ridge Partial Least Square for binary data
rpls.cv | Determination of the ridge regularization parameter and the number of PLS components to be used for classification with RPLS for binary data
SRBCT | Gene expression data from Khan et al. (2001)
TFA.estimate | Prediction of Transcription Factor Activities using PLS
variable.selection | Variable selection using the PLS weights