synsequence {seqinr} | R Documentation

## Random synonymous coding sequence generation

### Description

Generates a random synonymous coding sequence, according to a certain codon usage bias

### Usage

    synsequence(sequence, numcode = 1, ucoweight = NULL)

### Arguments

`sequence` | A nucleic acids sequence
`numcode` | The genetic code number as in `translate`
`ucoweight` | A list of weights containing the desired codon usage bias as generated by `ucoweight`

### Value

a sequence translating to the same protein sequence as the original one (cf. `translate`), but containing synonymous codons

### Author(s)

Leonor Palmeira

### References

`citation("seqinr")`

### See Also

`ucoweight`

### Examples

      data(ec999)
      sequence=ec999[1][[1]]
      synsequence(sequence,1,ucoweight(sequence))

[Package seqinr version 1.0-4 Index]