prochlo {seqinr} | R Documentation

## Zscore on three strains of Prochlorococcus marinus

### Description

This dataset contains the zscores computed with the codon model on all CDS from 3 strains of Procholorococcus marinus (as retrieved from Genome Reviews database on June 16, 2005)

### Usage

    data(prochlo)

### Format

List of three dataframes of the zscore of each of the 16 dinucleotides on each CDS retrieved from the specific strain.

BX548174
  strain adapted to living at a depth of 5 meters (high levels of UV exposure) `base` model on each intergenic sequence
AE017126
  strain adapted to living at a depth of 120 meters (low levels of UV exposure)
BX548175
  strain adapted to living at a depth of 135 meters (low levels of UV exposure)

### References

Palmeira, L., Guéguen, L. and Lobry JR. (in prep) UV-targeted dinucleotides are not depleted in light-exposed Prokaryotic genomes.

`citation("seqinr")`

### See Also

`zscore`

### Examples

    data(prochlo)

[Package seqinr version 1.0-4 Index]