plot.SeqAcnucWeb {seqinr} | R Documentation

## To Plot Subsequences on the Parent Sequence

### Description

This function allows to plot all the type of subsequences on a parent sequence.Subsequences are represented by colored rectangle on the parent sequence. As an example, types could be CDS, TRNA, RRNA .... In order to get all the types that are available for the selected database, please run `getType.socket`.

### Usage

    plot.SeqAcnucWeb(x, type = "all", ...)

### Arguments

`x` | A sequence of class `SeqAcnucWeb`
`type` | The type of subsequences to plot. if `all`, all the type of subsequences will be drawn.
`...` | graphical parameters can also be specified as arguments

### Value

The plot. A list giving, for each subsequence, its position on the parent sequence.

### Author(s)

D. Charif

### References

http://pbil.univ-lyon1.fr/databases/acnuc.html

`citation("seqinr")`

### See Also

`getType`, `query`

### Examples

    ## Not run:  s=choosebank("hovernucl")
    ## Not run:  query(s$socket,"list","sp=homo sapiens et k=globin@")
    ## Not run:  plot.SeqAcnucWeb(list$req[[22]])
    ## Not run:  plot.SeqAcnucWeb(list$req[[22]],type=c("CDS","5'NCR"))

[Package seqinr version 1.0-4 Index]