dinucl                package:seqinr                R Documentation

_M_e_a_n _z_s_c_o_r_e _o_n _2_4_2 _c_o_m_p_l_e_t_e _b_a_c_t_e_r_i_a_l _c_h_r_o_m_o_s_o_m_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     This dataset contains the mean zscores as computed on all
     intergenic sequences (intergenic) and on all CDS (coding) from 242
     complete bacterial chromosomes (as retrieved from Genome Reviews
     database on June 16, 2005).

_U_s_a_g_e:

     data(dinucl)

_F_o_r_m_a_t:

     List of two dataframes of 242 chromosomes and 16 dinucleotides:
     one for intergenic, one for coding sequences.

     _i_n_t_e_r_g_e_n_i_c the mean of 'zscore' computed with the 'base' model on
          each intergenic sequence

     _c_o_d_i_n_g the mean of 'zscore' computed with the 'codon' model on
          each coding sequence

_R_e_f_e_r_e_n_c_e_s:

     Palmeira, L., Guguen, L. and Lobry JR. (in prep) UV-targeted
     dinucleotides are not depleted in light-exposed Prokaryotic
     genomes.

     'citation("seqinr")'

_S_e_e _A_l_s_o:

     'zscore'

_E_x_a_m_p_l_e_s:

     data(dinucl)

