gb2fasta               package:seqinr               R Documentation

_c_o_n_v_e_r_s_i_o_n _o_f _G_e_n_B_a_n_k _f_i_l_e _i_n_t_o _f_a_s_t_a _f_i_l_e

_D_e_s_c_r_i_p_t_i_o_n:

     Converts a single entry in GenBank format into a fasta file.

_U_s_a_g_e:

     gb2fasta(source.file =
     "ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Agrobacterium_tumefaciens_C58_Cereon/NC_003065.gbk",
     destination.file = "Agrobacterium_tumefaciens_C58_Cereon.fasta")

_A_r_g_u_m_e_n_t_s:

source.file: GenBank file 

destination.file: Fasta file 

_D_e_t_a_i_l_s:

     Multiple entries in GenBank file are not supported.

_V_a_l_u_e:

     none

_A_u_t_h_o_r(_s):

     J.R. Lobry

_R_e_f_e_r_e_n_c_e_s:

      'citation("seqinr")'

_S_e_e _A_l_s_o:

     'oriloc'

_E_x_a_m_p_l_e_s:

     ## Not run: gb2fasta()

