gbk2g2                package:seqinr                R Documentation

_C_o_n_v_e_r_s_i_o_n _o_f _a _G_e_n_B_a_n_k _f_o_r_m_a_t _f_i_l_e _i_n_t_o _a _g_l_i_m_m_e_r-_l_i_k_e _o_n_e

_D_e_s_c_r_i_p_t_i_o_n:

     This function reads a file in GenBank format and converts the
     features corresponding to CDS (Coding Sequences) into a format
     similar to glimmer program output.

_U_s_a_g_e:

     gbk2g2(gbkfile = "ftp://pbil.univ-lyon1.fr/pub/logiciel/oriloc/ct.gbk",
     g2.coord = "g2.coord")

_A_r_g_u_m_e_n_t_s:

 gbkfile: The name of the GenBank file 

g2.coord: The name of the glimmer-like file 

_D_e_t_a_i_l_s:

     Partial CDS (either 5' or 3') and join in features are discarded.

_V_a_l_u_e:

_A_u_t_h_o_r(_s):

     J.R. lobry

_R_e_f_e_r_e_n_c_e_s:

     'citation("seqinr")'

_S_e_e _A_l_s_o:

     'oriloc'

_E_x_a_m_p_l_e_s:

      ## Not run:  gbk2g2() 

