prochlo                package:seqinr                R Documentation

_Z_s_c_o_r_e _o_n _t_h_r_e_e _s_t_r_a_i_n_s _o_f _P_r_o_c_h_l_o_r_o_c_o_c_c_u_s _m_a_r_i_n_u_s

_D_e_s_c_r_i_p_t_i_o_n:

     This dataset contains the zscores computed with the codon model on
     all CDS from 3 strains of Procholorococcus marinus (as retrieved
     from Genome Reviews database on June 16, 2005)

_U_s_a_g_e:

     data(prochlo)

_F_o_r_m_a_t:

     List of three dataframes of the zscore of each of the 16
     dinucleotides on each CDS retrieved from the specific strain.

     _B_X_5_4_8_1_7_4 strain adapted to living at a depth of 5 meters (high
          levels of UV exposure) 'base' model on each intergenic
          sequence

     _A_E_0_1_7_1_2_6 strain adapted to living at a depth of 120 meters (low
          levels of UV exposure)

     _B_X_5_4_8_1_7_5 strain adapted to living at a depth of 135 meters (low
          levels of UV exposure)

_R_e_f_e_r_e_n_c_e_s:

     Palmeira, L., Guguen, L. and Lobry JR. (in prep) UV-targeted
     dinucleotides are not depleted in light-exposed Prokaryotic
     genomes.

     'citation("seqinr")'

_S_e_e _A_l_s_o:

     'zscore'

_E_x_a_m_p_l_e_s:

     data(prochlo)

