fdr.compare.method {varmixt} | R Documentation

## Comparison of the different analysis methods

### Description

This function compares the different analysis methods for a given FDR threshold

### Usage

    fdr.compare.method(data,qval=0.05,display.all=FALSE,lambda=seq(0,0.95,0.05))

### Arguments

`data` | gene expression data object
`qval` | FDR cut-off
`display.all` |
`lambda` | Argument of the q-value function

### Details

### Value

A data frame with each gene classified as regulated/not-regulated in for each method (gene-specific, homoscedastic, Varmixt). Also prints the tables of comparison.

### Note

### Author(s)

Paul Delmar

### References

### See Also

`fdr.compare.res`,`compare.res`,`vm.analysis`, `vm.analysis.paired`

### Examples

[Package varmixt version 0.2-4 Index]