Entry: BCI
Aliases: BCI
Keywords: datasets
Description: Barro Colorado Island Tree Counts
URL: ../../../library/vegan/html/BCI.html

Entry: anosim
Aliases: anosim print.anosim summary.anosim plot.anosim
Keywords: multivariate nonparametric htest
Description: Analysis of Similarities
URL: ../../../library/vegan/html/anosim.html

Entry: anova.cca
Aliases: anova.cca permutest.cca print.permutest.cca print.anova.cca
Keywords: multivariate htest
Description: Permutation Test for Constrained Correspondence Analysis, Redundancy Analysis and Constrained Analysis of Principal Coordinates
URL: ../../../library/vegan/html/anova.cca.html

Entry: bioenv
Aliases: bioenv bioenv.default bioenv.formula print.bioenv summary.bioenv print.summary.bioenv ripley.subsets ripley.subs
Keywords: multivariate
Description: Best Subset of Environmental Variables with Maximum (Rank) Correlation with Community Dissimilarities
URL: ../../../library/vegan/html/bioenv.html

Entry: capscale
Aliases: capscale
Keywords: multivariate
Description: [Partial] Constrained Analysis of Principal Coordinates
URL: ../../../library/vegan/html/capscale.html

Entry: cca
Aliases: cca cca.default cca.formula print.cca summary.cca print.summary.cca rda rda.default rda.formula summary.rda
Keywords: multivariate
Description: [Partial] [Constrained] Correspondence Analysis and Redundancy Analysis
URL: ../../../library/vegan/html/cca.html

Entry: cca.object
Aliases: cca.object
Keywords: models multivariate
Description: Result Object from Constrained Ordination with cca, rda or capscale
URL: ../../../library/vegan/html/cca.object.html

Entry: decorana
Aliases: decorana print.decorana summary.decorana print.summary.decorana plot.decorana downweight scores.decorana points.decorana text.decorana
Keywords: multivariate
Description: Detrended Correspondence Analysis and Basic Reciprocal Averaging
URL: ../../../library/vegan/html/decorana.html

Entry: decostand
Aliases: decostand wisconsin
Keywords: multivariate manip
Description: Standardizaton Methods for Community Ecology
URL: ../../../library/vegan/html/decostand.html

Entry: deviance.cca
Aliases: deviance.cca deviance.rda deviance.capscale extractAIC.cca
Keywords: multivariate models
Description: Statistics Resembling Deviance and AIC for Constrained Ordination
URL: ../../../library/vegan/html/deviance.cca.html

Entry: distconnected
Aliases: distconnected no.shared spantree
Keywords: multivariate
Description: Connectedness and Minimum Spanning Tree for Dissimilarities
URL: ../../../library/vegan/html/distconnected.html

Entry: diversity
Aliases: diversity rarefy renyi fisher.alpha specnumber
Keywords: univar
Description: Ecological Diversity Indices and Rarefaction Species Richness
URL: ../../../library/vegan/html/diversity.html

Entry: dune
Aliases: dune dune.env
Keywords: datasets
Description: Vegetation and Environment in Dutch Dune Meadows.
URL: ../../../library/vegan/html/dune.html

Entry: envfit
Aliases: envfit envfit.default envfit.formula vectorfit factorfit plot.envfit print.envfit print.factorfit print.vectorfit scores.envfit
Keywords: multivariate aplot htest
Description: Fits an Environmental Vector or Factor onto an Ordination
URL: ../../../library/vegan/html/envfit.html

Entry: fisherfit
Aliases: fisherfit as.fisher plot.fisherfit print.fisherfit profile.fisherfit confint.fisherfit plot.profile.fisherfit prestonfit prestondistr as.preston plot.prestonfit lines.prestonfit print.prestonfit veiledspec
Keywords: univar distribution
Description: Fit Fisher's Logseries and Preston's Lognormal Model to Abundance Data
URL: ../../../library/vegan/html/fisherfit.html

Entry: goodness.cca
Aliases: goodness goodness.rda goodness.cca inertcomp spenvcor vif.cca alias.cca
Keywords: multivariate
Description: Diagnostic Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA)
URL: ../../../library/vegan/html/goodness.cca.html

Entry: goodness.metaMDS
Aliases: goodness.metaMDS stressplot
Keywords: multivariate
Description: Goodness of Fit and Shepard Plot for Nonmetric Multidimensional Scaling
URL: ../../../library/vegan/html/goodness.metaMDS.html

Entry: humpfit
Aliases: humpfit print.humpfit summary.humpfit print.summary.humpfit lines.humpfit plot.humpfit points.humpfit predict.humpfit profile.humpfit
Keywords: models regression nonlinear
Description: No-interaction Model for Hump-backed Species Richness vs. Biomass
URL: ../../../library/vegan/html/humpfit.html

Entry: linestack
Aliases: linestack
Keywords: hplot aplot
Description: Plots One-dimensional Labelled Diagrams without Overwriting Labels
URL: ../../../library/vegan/html/linestack.html

Entry: make.cepnames
Aliases: make.cepnames
Keywords: character
Description: Abbreviates a Botanical or Zoological Latin Name into an Eight-character Name
URL: ../../../library/vegan/html/make.cepnames.html

Entry: mantel
Aliases: mantel mantel.partial print.mantel
Keywords: multivariate htest
Description: Mantel and Partial Mantel Tests for Dissimilarity Matrices
URL: ../../../library/vegan/html/mantel.html

Entry: metaMDS
Aliases: metaMDS metaMDSdist metaMDSiter metaMDSredist initMDS postMDS print.metaMDS plot.metaMDS points.metaMDS text.metaMDS scores.metaMDS
Keywords: multivariate
Description: Nonmetric Multidimensional Scaling with Stable Solution from Random Starts, Axis Scaling and Species Scores
URL: ../../../library/vegan/html/metaMDS.html

Entry: ordihull
Aliases: ordihull ordiarrows ordisegments ordigrid ordispider ordiellipse ordicluster ordispantree weights.cca weights.rda weights.decorana
Keywords: aplot
Description: Add Graphical Items to Ordination Diagrams
URL: ../../../library/vegan/html/ordihull.html

Entry: ordiplot
Aliases: ordiplot identify.ordiplot scores.ordiplot points.ordiplot text.ordiplot
Keywords: hplot iplot aplot
Description: Alternative plot and identify Functions for Ordination
URL: ../../../library/vegan/html/ordiplot.html

Entry: ordiplot3d
Aliases: ordiplot3d ordirgl orglpoints orgltext orglsegments orglspider
Keywords: hplot dynamic
Description: Three-Dimensional and Dynamic Ordination Graphics
URL: ../../../library/vegan/html/ordiplot3d.html

Entry: ordisurf
Aliases: ordisurf
Keywords: multivariate aplot
Description: Smooths Variables and Plots Contours on Ordination.
URL: ../../../library/vegan/html/ordisurf.html

Entry: orditorp
Aliases: orditorp
Keywords: aplot hplot
Description: Add Text or Points to Ordination Plots
URL: ../../../library/vegan/html/orditorp.html

Entry: plot.cca
Aliases: plot.cca text.cca points.cca scores.cca
Keywords: hplot aplot
Description: Plot or Extract Results of Constrained Correspondence Analysis or Redundancy Analysis
URL: ../../../library/vegan/html/plot.cca.html

Entry: predict.cca
Aliases: fitted.cca fitted.rda residuals.cca residuals.rda predict.cca predict.rda predict.decorana coef.cca coef.rda calibrate.cca
Keywords: multivariate
Description: Prediction Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA)
URL: ../../../library/vegan/html/predict.cca.html

Entry: procrustes
Aliases: procrustes print.procrustes summary.procrustes print.summary.procrustes plot.procrustes points.procrustes lines.procrustes residuals.procrustes fitted.procrustes protest print.protest
Keywords: multivariate htest
Description: Procrustes Rotation of Two Configurations
URL: ../../../library/vegan/html/procrustes.html

Entry: radfit
Aliases: radfit radfit.default radfit.data.frame AIC.radfit as.rad coef.radfit fitted.radfit lines.radline plot.radfit.frame plot.radfit plot.radline plot.rad points.radline print.radfit.frame print.radfit print.radline rad.preempt rad.lognormal rad.veil rad.zipf rad.zipfbrot
Keywords: univar distribution
Description: Rank -- Abundance or Dominance / Diversity Models
URL: ../../../library/vegan/html/radfit.html

Entry: rankindex
Aliases: rankindex
Keywords: multivariate
Description: Compares Dissimilarity Indices for Gradient Detection
URL: ../../../library/vegan/html/rankindex.html

Entry: read.cep
Aliases: read.cep
Keywords: IO file
Description: Reads a CEP (Canoco) data file
URL: ../../../library/vegan/html/read.cep.html

Entry: scores
Aliases: scores scores.default
Keywords: multivariate
Description: Get Species or Site Scores from an Ordination
URL: ../../../library/vegan/html/scores.html

Entry: specaccum
Aliases: specaccum print.specaccum summary.specaccum plot.specaccum boxplot.specaccum
Keywords: univar
Description: Species Accumulation Curves
URL: ../../../library/vegan/html/specaccum.html

Entry: specpool
Aliases: specpool specpool2vect estimateR estimateR.default estimateR.matrix estimateR.data.frame
Keywords: univar
Description: Extrapolated Species Richness in a Species Pool
URL: ../../../library/vegan/html/specpool.html

Entry: stepacross
Aliases: stepacross
Keywords: multivariate
Description: Stepacross as Flexible Shortest Paths or Extended Dissimilarities
URL: ../../../library/vegan/html/stepacross.html

Entry: varespec
Aliases: varechem varespec
Keywords: datasets
Description: Vegetation and environment in lichen pastures
URL: ../../../library/vegan/html/varechem.html

Entry: vegan-internal
Aliases: ordiParseFormula permuted.index centroids.cca spider.cca ordiTerminfo
Keywords: internal
Description: Internal vegan functions
URL: ../../../library/vegan/html/vegan-internal.html

Entry: vegdist
Aliases: vegdist
Keywords: multivariate
Description: Dissimilarity Indices for Community Ecologists
URL: ../../../library/vegan/html/vegdist.html

Entry: vegemite
Aliases: vegemite coverscale
Keywords: print manip
Description: Prints a Compact, Ordered Vegetation Table
URL: ../../../library/vegan/html/vegemite.html

Entry: wascores
Aliases: wascores eigengrad
Keywords: multivariate univar
Description: Weighted Averages Scores for Species
URL: ../../../library/vegan/html/wascores.html
